Motif HL_84193.1 Version HL_84193.1 of this group appears in releases 3.77 to 3.83

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	1-9	8-9
1	HL_5K7D_002	5K7D	0.5362	0		A	RNA 47-MER	G	33	C	34	C	35	C	36	U	37	A	38	A	39	G	40	C	41	cWW	cSH
2	HL_6UFJ_004	6UFJ	0.4892	0		C	Pistol ribozyme	G	33	C	34	U	35	C	36	A	37	A	38	A	39	G	40	C	41	cWW	cSH
3	HL_7JRR_001	7JRR	0.1386	0		A	RNA (50-MER)	G	12	A	13	A	14	C	15	C	16	A	17	U	18	C	19	C	20	cWW
4	HL_7JRR_002	7JRR	0.0000	0		A	RNA (50-MER)	G	39	G	40	A	41	U	42	G	43	G	44	U	45	U	46	C	47	cWW
5	HL_4FRN_008	4FRN	0.4316	1		B	Cobalamin riboswitch aptamer domain	G	90	C	91	A	92	A	93	G	94	G	95	A	96	A	98	C	99	cWW
6	HL_5J7L_135	5J7L	0.6162	0	Pseudoknot geometry (H)	DA	LSU rRNA	U	87	G	88	A	89	U	90	A	91	U	92	G	93	A	94	A	95	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCCCUAAGC	1
GCUCAAAGC	1
GAACCAUCC	1
GGAUGGUUC	1
GCAAGGAGAC	1
UGAUAUGAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
CCCUAAG	1
CUCAAAG	1
AACCAUC	1
GAUGGUU	1
CAAGGAGA	1
GAUAUGA	1

Release history

Release	3.77	3.78	3.79	3.80	3.81	3.82	3.83
Date	2023-12-06	2024-01-03	2024-01-03	2024-01-31	2024-02-28	2024-03-27	2024-04-24
Status	New id, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Pseudoknot geometry (H) (1)
Basepair signature: cWW-F-F-F-F-F-F-F
Heat map statistics: Min 0.14 | Avg 0.43 | Max 0.77

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