Motif HL_84193.1 Version HL_84193.1 of this group appears in releases 3.77 to 3.83
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 8-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5K7D_002 | 5K7D | 0.5362 | 0 | A | RNA 47-MER | G | 33 | C | 34 | C | 35 | C | 36 | U | 37 | A | 38 | A | 39 | G | 40 | C | 41 | cWW | cSH | |
| 2 | HL_6UFJ_004 | 6UFJ | 0.4892 | 0 | C | RNA (50-MER) | G | 33 | C | 34 | U | 35 | C | 36 | A | 37 | A | 38 | A | 39 | G | 40 | C | 41 | cWW | cSH | |
| 3 | HL_7JRR_001 | 7JRR | 0.1386 | 0 | A | RNA (50-MER) | G | 12 | A | 13 | A | 14 | C | 15 | C | 16 | A | 17 | U | 18 | C | 19 | C | 20 | cWW | ||
| 4 | HL_7JRR_002 | 7JRR | 0.0000 | 0 | A | RNA (50-MER) | G | 39 | G | 40 | A | 41 | U | 42 | G | 43 | G | 44 | U | 45 | U | 46 | C | 47 | cWW | ||
| 5 | HL_4FRN_008 | 4FRN | 0.4316 | 1 | B | Cobalamin riboswitch aptamer domain | G | 90 | C | 91 | A | 92 | A | 93 | G | 94 | G | 95 | A | 96 | A | 98 | C | 99 | cWW | ||
| 6 | HL_5J7L_135 | 5J7L | 0.6162 | 0 | DA | LSU rRNA | U | 87 | G | 88 | A | 89 | U | 90 | A | 91 | U | 92 | G | 93 | A | 94 | A | 95 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCCUAAGC | 1 |
| GCUCAAAGC | 1 |
| GAACCAUCC | 1 |
| GGAUGGUUC | 1 |
| GCAAGGAGAC | 1 |
| UGAUAUGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCCUAAG | 1 |
| CUCAAAG | 1 |
| AACCAUC | 1 |
| GAUGGUU | 1 |
| CAAGGAGA | 1 |
| GAUAUGA | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 |
|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.14 | Avg 0.43 | Max 0.77
Coloring options: