Motif HL_84353.1 Version HL_84353.1 of this group appears in releases 0.6 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1F1T_001 | 1F1T | 0.0000 | 0 | A | MALACHITE GREEN APTAMER RNA | C | 14 | G | 15 | A | 16 | G | 17 | A | 18 | G | 19 | cWW | ntSH |
| 2 | HL_4FAW_004 | 4FAW | 0.9825 | 1 | A | Group II catalytic intron D1-D4-3 | G | 135 | G | 136 | A | 138 | C | 139 | A | 140 | C | 141 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAGAG | 1 |
| GGAACAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGA | 1 |
| GAACA | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_84353.1 | Only in the parent motif |
|---|---|---|---|
| HL_60420.1 Compare | HL_1F1T_001 | HL_4FAW_004 |
Children motifs
| Child motif | Common motif instances | Only in HL_84353.1 | Only in the child motif |
|---|---|---|---|
| HL_95756.1 Compare | HL_1F1T_001 | HL_4FAW_004 | HL_4KR7_001 |
| HL_97022.1 Compare | HL_4FAW_004 | HL_1F1T_001 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-R-R
- Heat map statistics
- Min 0.98 | Avg 0.49 | Max 0.98
Coloring options: