Motif HL_87844.3 Version HL_87844.3 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3DIR_003 | 3DIR | 0.8087 | 0 | A | RNA (174-MER) | G | 124 | G | 125 | A | 126 | A | 127 | U | 128 | A | 129 | C | 130 | cWW | ntSH | ncSW |
| 2 | HL_1S72_006 | 1S72 | 0.1155 | 1 | 0 | LSU rRNA | G | 164 | A | 165 | A | 167 | C | 168 | A | 169 | U | 170 | C | 171 | cWW | tSH | |
| 3 | HL_4IOA_006 | 4IOA | 0.0948 | 1 | X | LSU rRNA | G | 171 | A | 172 | A | 174 | C | 175 | A | 176 | U | 177 | C | 178 | cWW | ntSH | |
| 4 | HL_4NVV_005 | 4NVV | 0.0000 | 1 | A | 23S Ribosomal RNA | G | 183 | A | 184 | A | 186 | C | 187 | A | 188 | U | 189 | C | 190 | cWW | tSH | |
| 5 | HL_2QBG_008 | 2QBG | 0.0952 | 1 | B | 23S rRNA | G | 194 | A | 195 | A | 197 | C | 198 | A | 199 | U | 200 | C | 201 | cWW | ntSH | |
| 6 | HL_3U5H_001 | 3U5H | 0.1536 | 1 | 5 | 25S rRNA | U | 38 | A | 39 | G | 41 | C | 42 | A | 43 | U | 44 | A | 45 | cWW | tSH | |
| 7 | HL_4A1B_001 | 4A1B | 0.2265 | 1 | 1 | 26S RRNA | U | 36 | A | 37 | G | 39 | C | 40 | A | 41 | U | 42 | A | 43 | cWW | ntSH | |
| 8 | HL_1VW3_004 | 1VW3 | 0.4651 | 1 | A | 21S ribosomal RNA | G | 234 | A | 235 | A | 237 | C | 238 | A | 239 | U | 240 | C | 241 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAACAUC | 5 |
| UAAGCAUA | 2 |
| GGAAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAACAU | 5 |
| AAGCAU | 2 |
| GAAUA | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_87844.3 | Only in the parent motif |
|---|---|---|---|
| HL_87844.2 Compare | HL_4A1B_001, HL_3DIR_003, HL_2QBG_008, HL_1S72_006, HL_4IOA_006, HL_3U5H_001 | HL_4NVV_005, HL_1VW3_004 | HL_3V2F_006, HL_2QBG_022, HL_3V2F_021 |
Children motifs
| Child motif | Common motif instances | Only in HL_87844.3 | Only in the child motif |
|---|---|---|---|
| HL_92565.1 Compare | HL_4A1B_001, HL_3DIR_003, HL_2QBG_008, HL_4NVV_005, HL_1VW3_004, HL_1S72_006, HL_4IOA_006, HL_3U5H_001 | HL_1VW3_053, HL_4CUV_064, HL_4A1B_063, HL_2QBG_064, HL_4CUV_001, HL_4NVV_060, HL_3U5H_064, HL_4IOA_061 |
- Annotations
-
- (8)
- Basepair signature
- cWW-tSH-R-R-R
- Heat map statistics
- Min 0.09 | Avg 0.34 | Max 0.92
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