Motif HL_92565.1 Version HL_92565.1 of this group appears in releases 1.15 to 1.15

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7	1-7	2-6	4-5
1	HL_1VW3_004	1VW3	0.4651	1		A	LSU rRNA	G	234	A	235	A	237	C	238	A	239	U	240	C	241	cWW	ntSH
2	HL_1S72_006	1S72	0.1155	1		0	LSU rRNA	G	164	A	165	A	167	C	168	A	169	U	170	C	171	cWW	tSH
3	HL_4IOA_006	4IOA	0.0948	1		X	LSU rRNA	G	171	A	172	A	174	C	175	A	176	U	177	C	178	cWW	ntSH
4	HL_4NVV_005	4NVV	0.0000	1		A	LSU rRNA	G	183	A	184	A	186	C	187	A	188	U	189	C	190	cWW	tSH
5	HL_2QBG_008	2QBG	0.0952	1		B	LSU rRNA	G	194	A	195	A	197	C	198	A	199	U	200	C	201	cWW	ntSH
6	HL_3U5H_001	3U5H	0.1536	1		5	LSU rRNA	U	38	A	39	G	41	C	42	A	43	U	44	A	45	cWW	tSH
7	HL_4CUV_001	4CUV	0.2088	1		1	LSU rRNA	U	38	A	39	G	41	C	42	A	43	U	44	A	45	cWW	ntSH
8	HL_4A1B_001	4A1B	0.2265	1		1	LSU rRNA	U	36	A	37	G	39	C	40	A	41	U	42	A	43	cWW	ntSH
9	HL_3DIR_003	3DIR	0.8087	0		A	Lysine riboswitch	G	124	G	125	A	126	A	127	U	128	A	129	C	130	cWW	ntSH	ncSW
10	HL_1VW3_053	1VW3	0.7448	0		A	LSU rRNA	C	2818	U	2819	G	2820	U	2821	U	2822	C	2823	G	2824	cWW
11	HL_4NVV_060	4NVV	0.7908	0		A	LSU rRNA	C	2563	U	2564	G	2565	U	2566	U	2567	C	2568	G	2569	cWW
12	HL_4IOA_061	4IOA	0.7999	0	LSU A loop (H)	X	LSU rRNA	C	2530	U	2531	G	2532	U	2533	U	2534	C	2535	G	2536	cWW
13	HL_2QBG_064	2QBG	0.7821	0		B	LSU rRNA	C	2551	U	2552	G	2553	U	2554	U	2555	C	2556	G	2557	cWW
14	HL_3U5H_064	3U5H	0.8125	0		5	LSU rRNA	U	2920	U	2921	G	2922	U	2923	U	2924	C	2925	A	2926	cWW
15	HL_4A1B_063	4A1B	0.7727	0		1	LSU rRNA	U	2908	U	2909	G	2910	U	2911	U	2912	C	2913	A	2914	cWW
16	HL_4CUV_064	4CUV	0.8124	0		1	LSU rRNA	U	2920	U	2921	G	2922	U	2923	U	2924	C	2925	A	2926	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAACAUC	5
CUGUUCG	4
UAAGCAUA	3
UUGUUCA	3
GGAAUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGUUC	7
AAACAU	5
AAGCAU	3
GAAUA	1

Release history

Release	1.15
Date	2014-06-15
Status	New id, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in HL_92565.1	Only in the parent motif
HL_87844.3 Compare	HL_4A1B_001, HL_3DIR_003, HL_2QBG_008, HL_4NVV_005, HL_1VW3_004, HL_1S72_006, HL_4IOA_006, HL_3U5H_001	HL_1VW3_053, HL_4CUV_064, HL_4A1B_063, HL_2QBG_064, HL_4CUV_001, HL_4NVV_060, HL_3U5H_064, HL_4IOA_061
HL_52574.4 Compare	HL_1VW3_053, HL_4A1B_063, HL_2QBG_064, HL_4NVV_060, HL_3U5H_064, HL_4IOA_061	HL_4A1B_001, HL_4CUV_064, HL_3DIR_003, HL_2QBG_008, HL_4NVV_005, HL_1VW3_004, HL_4CUV_001, HL_1S72_006, HL_4IOA_006, HL_3U5H_001	HL_2GDI_001, HL_2GDI_003, HL_1FJG_014, HL_1FJG_002, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014

Children motifs

Child motif	Common motif instances	Only in HL_92565.1	Only in the child motif
HL_48507.1 Compare	HL_4A1B_001, HL_3DIR_003, HL_2QBG_008, HL_4NVV_005, HL_4CUV_001, HL_1S72_006, HL_4IOA_006, HL_3U5H_001	HL_1VW3_053, HL_4CUV_064, HL_1VW3_004, HL_4A1B_063, HL_2QBG_064, HL_4NVV_060, HL_3U5H_064, HL_4IOA_061	HL_4NVV_020, HL_2QBG_022, HL_1VX6_001
HL_37020.1 Compare	HL_1VW3_053, HL_4CUV_064, HL_4A1B_063, HL_2QBG_064, HL_4NVV_060, HL_3U5H_064, HL_4IOA_061	HL_4A1B_001, HL_3DIR_003, HL_2QBG_008, HL_4NVV_005, HL_1VW3_004, HL_4CUV_001, HL_1S72_006, HL_4IOA_006, HL_3U5H_001	HL_4CUV_063, HL_1VW3_052, HL_1VX2_035, HL_1S72_063, HL_4A1B_062, HL_2QBG_063, HL_1FJG_002, HL_4NVV_059, HL_4IOA_060, HL_1VX6_063, HL_1VX6_062, HL_3U5H_063
HL_96515.1 Compare	HL_1VW3_004	HL_4A1B_001, HL_1VW3_053, HL_3U5H_001, HL_4CUV_064, HL_3DIR_003, HL_2QBG_008, HL_1S72_006, HL_4NVV_005, HL_4A1B_063, HL_2QBG_064, HL_4CUV_001, HL_4NVV_060, HL_3U5H_064, HL_4IOA_006, HL_4IOA_061

Annotations: (15)
LSU A loop (H) (1)
Basepair signature: cWW-tSH-R-R-R
Heat map statistics: Min 0.09 | Avg 0.53 | Max 0.92

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Coloring options: Nucleotide numbers

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