Motif HL_87939.1 Version HL_87939.1 of this group appears in releases 3.80 to 3.84
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_073 | 8C3A | 0.2346 | 2 | 3 | 5S rRNA | C | 36 | G | 37 | U | 38 | G | 41 | cWW | |
| 2 | HL_5TBW_185 | 5TBW | 0.2329 | 2 | AS | 5S rRNA | C | 36 | G | 37 | U | 38 | G | 41 | cWW | |
| 3 | HL_1MJI_002 | 1MJI | 0.0858 | 3 | D | 5S rRNA fragment | C | 38 | A | 39 | U | 40 | G | 44 | cWW | |
| 4 | HL_5J7L_203 | 5J7L | 0.0000 | 3 | DB | 5S rRNA | C | 38 | A | 39 | U | 40 | G | 44 | cWW | |
| 5 | HL_7RQB_070 | 7RQB | 0.0740 | 3 | 1B | 5S rRNA | C | 38 | A | 39 | U | 40 | G | 44 | cWW | |
| 6 | HL_4V9F_071 | 4V9F | 0.0917 | 3 | 9 | 5S rRNA | C | 37 | A | 38 | U | 39 | G | 43 | cWW | |
| 7 | HL_4WF9_066 | 4WF9 | 0.2252 | 3 | Y | 5S rRNA | C | 36 | A | 37 | U | 38 | G | 42 | cWW | |
| 8 | HL_7A0S_069 | 7A0S | 0.3377 | 3 | Y | 5S rRNA | C | 40 | A | 41 | U | 42 | G | 46 | cWW | |
| 9 | HL_1H4S_002 | 1H4S | 0.5833 | 3 | tRNA anticodon loop with synthetase | T | tRNA | U | 32 | U | 33 | C | 34 | A | 38 | cWW |
| 10 | HL_8C3A_076 | 8C3A | 0.9318 | 3 | 4 | 5.8S rRNA | C | 108 | A | 109 | C | 110 | G | 114 | cWW | |
| 11 | HL_5TBW_075 | 5TBW | 0.9503 | 3 | 4 | 5.8S rRNA | C | 108 | A | 109 | C | 110 | G | 114 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUGCCG | 4 |
| CACAUUG | 2 |
| CGUUCG | 1 |
| CGUCCG | 1 |
| CAUUCCG | 1 |
| CAUCCCG | 1 |
| UUCGGGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGCC | 4 |
| ACAUU | 2 |
| GUUC | 1 |
| GUCC | 1 |
| AUUCC | 1 |
| AUCCC | 1 |
| UCGGG | 1 |
- Annotations
-
- (10)
- tRNA anticodon loop with synthetase (1)
- Basepair signature
- cWW-F-F
- Heat map statistics
- Min 0.07 | Avg 0.46 | Max 0.99
Coloring options: