Motif HL_88311.2 Version HL_88311.2 of this group appears in releases 1.1 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 5-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4IOA_022 | 4IOA | 0.2359 | 3 | X | LSU rRNA | U | 757 | G | 758 | C | 759 | G | 761 | A | 762 | A | 763 | A | 766 | cWW | tSW | ncWS |
| 2 | HL_1S72_024 | 1S72 | 0.2493 | 3 | 0 | LSU rRNA | U | 837 | C | 838 | C | 839 | A | 841 | C | 842 | A | 843 | A | 846 | cWW | tSW | cWS |
| 3 | HL_2QBG_024 | 2QBG | 0.0000 | 3 | B | 23S rRNA | U | 744 | G | 745 | U | 746 | G | 748 | A | 749 | A | 750 | A | 753 | cWW | tSW | cWS |
| 4 | HL_3V2F_023 | 3V2F | 0.1819 | 3 | A | 23S Ribosomal RNA | G | 744 | G | 745 | A | 746 | G | 748 | C | 749 | A | 750 | C | 753 | cWW | tSW | cWS |
| 5 | HL_4A1B_021 | 4A1B | 0.2965 | 3 | 1 | 26S RRNA | A | 901 | C | 902 | G | 903 | G | 905 | C | 906 | A | 907 | U | 910 | cWW | ntSW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCUGAAACA | 1 |
| UCCUACAAUA | 1 |
| UGUUGAAAAA | 1 |
| GGAUGCAAAC | 1 |
| ACGUGCAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCUGAAAC | 1 |
| CCUACAAU | 1 |
| GUUGAAAA | 1 |
| GAUGCAAA | 1 |
| CGUGCAAA | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_88311.2 | Only in the parent motif |
|---|---|---|---|
| HL_88311.1 Compare | HL_1S72_024, HL_2QBG_024, HL_4A1B_021, HL_3V2F_023 | HL_4IOA_022 | HL_2ZJR_022 |
Children motifs
| Child motif | Common motif instances | Only in HL_88311.2 | Only in the child motif |
|---|---|---|---|
| HL_88311.3 Compare | HL_1S72_024, HL_4IOA_022, HL_2QBG_024, HL_4A1B_021 | HL_3V2F_023 | HL_1VW3_015, HL_4NVV_022 |
- Annotations
-
- (5)
- Basepair signature
- cWW-tSW-R-R
- Heat map statistics
- Min 0.18 | Avg 0.21 | Max 0.36
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