Motif HL_88918.1 Version HL_88918.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WJ4_001 | 4WJ4 | 0.4529 | 3 | B | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | ncSW | ||
| 2 | HL_4YCO_001 | 4YCO | 0.3778 | 3 | D | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | cWS | cSH | |
| 3 | HL_6CU1_003 | 6CU1 | 0.3492 | 2 | A | C | 58 | A | 59 | A | 60 | G | 63 | U | 64 | A | 65 | G | 66 | cWW | cWS | cSH | |
| 4 | HL_2AZX_004 | 2AZX | 0.0000 | 2 | tRNA D-loop | D | C | 513 | A | 514 | A | 515 | G | 519 | U | 520 | A | 521 | G | 522 | cWW | cWS | |
| 5 | HL_4V9K_033 | 4V9K | 0.8465 | 4 | tRNA D-loop | AW | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | ||
| 6 | HL_4V90_032 | 4V90 | 1.0079 | 3 | tRNA D-loop | AV | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUCGGUAG | 2 |
| CAAUGGUAG | 2 |
| CAGUUGGUUAG | 1 |
| CAGCCGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUCGGUA | 2 |
| AAUGGUA | 2 |
| AGUUGGUUA | 1 |
| AGCCGGUA | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (3)
- (3)
- Basepair signature
- cWW-cWS-R-R-R
- Heat map statistics
- Min 0.15 | Avg 0.60 | Max 1.09
Coloring options: