Motif HL_88918.1 Version HL_88918.1 of this group appears in releases 3.62 to 3.76

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7	2-6	4-5
1	HL_4WJ4_001	4WJ4	0.4529	3		B	tRNA	C	13	A	14	G	15	G	19	U	20	A	21	G	22	cWW		ncSW
2	HL_4YCO_001	4YCO	0.3778	3		D	tRNA	C	13	A	14	G	15	G	19	U	20	A	21	G	22	cWW	cWS	cSH
3	HL_6CU1_003	6CU1	0.3492	2		A	Y RNA-like	C	58	A	59	A	60	G	63	U	64	A	65	G	66	cWW	cWS	cSH
4	HL_2AZX_004	2AZX	0.0000	2	tRNA D-loop	D	72-MER	C	513	A	514	A	515	G	519	U	520	A	521	G	522	cWW	cWS
5	HL_4V9K_033	4V9K	0.8465	4	tRNA D-loop	AW	tRNA	C	13	A	14	G	15	G	19	U	20	A	21	G	22	cWW
6	HL_4V90_032	4V90	1.0079	3	tRNA D-loop	AV	tRNA	C	13	A	14	G	15	G	19	U	20	A	21	G	22	cWW	ncWS

3D structures

Complete motif including flanking bases

Sequence	Counts
CAGUCGGUAG	2
CAAUGGUAG	2
CAGUUGGUUAG	1
CAGCCGGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGUCGGUA	2
AAUGGUA	2
AGUUGGUUA	1
AGCCGGUA	1

Release history

Release	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	New id, > 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tRNA D-loop (3)
(3)
Basepair signature: cWW-cWS-R-R-R
Heat map statistics: Min 0.15 | Avg 0.60 | Max 1.09

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