Motif HL_89914.1 Version HL_89914.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_027 | 5TBW | 0.7595 | 4 | 1 | LSU rRNA | C | 1239 | A | 1240 | U | 1241 | G | 1242 | G | 1243 | C | 1248 | G | 1249 | cWW | ||
| 2 | HL_3IVK_005 | 3IVK | 0.0000 | 1 | M | class I ligase product | G | 92 | U | 93 | U | 94 | A | 95 | A | 96 | A | 98 | C | 99 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUGGAAGUCG | 1 |
| GUUAAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGGAAGUC | 1 |
| UUAAAA | 1 |
- Annotations
- Basepair signature
- cWW-tSH-F-F-F-F
- Heat map statistics
- Min 0.76 | Avg 0.38 | Max 0.76
Coloring options: