Motif HL_90579.2 Version HL_90579.2 of this group appears in releases 1.1 to 1.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_061 | 2QBG | 0.1595 | 1 | B | 23S rRNA | U | 2404 | G | 2405 | A | 2407 | U | 2408 | G | 2409 | G | 2410 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH | |
| 2 | HL_4IOA_058 | 4IOA | 0.0000 | 1 | X | LSU rRNA | C | 2383 | G | 2384 | G | 2386 | U | 2387 | G | 2388 | G | 2389 | A | 2390 | A | 2391 | G | 2392 | cWW | tSH | |
| 3 | HL_3V2F_057 | 3V2F | 0.1241 | 1 | A | 23S Ribosomal RNA | C | 2404 | G | 2405 | G | 2407 | U | 2408 | G | 2409 | G | 2410 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGUGGAAG | 2 |
| UGAAUGGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGUGGAA | 2 |
| GAAUGGAA | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 |
|---|---|---|---|---|---|---|---|
| Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_90579.2 | Only in the parent motif |
|---|---|---|---|
| HL_90579.1 Compare | HL_3V2F_057, HL_2QBG_061 | HL_4IOA_058 | HL_2ZJR_057 |
Children motifs
| Child motif | Common motif instances | Only in HL_90579.2 | Only in the child motif |
|---|---|---|---|
| HL_90579.3 Compare | HL_3V2F_057, HL_4IOA_058 | HL_2QBG_061 | HL_3U5H_049 |
| HL_76585.1 Compare | HL_2QBG_061 | HL_3V2F_057, HL_4IOA_058 |
- Annotations
- Basepair signature
- cWW-tSH-R-R-R-R-R
- Heat map statistics
- Min 0.12 | Avg 0.10 | Max 0.18
Coloring options: