Motif HL_90579.1 Version HL_90579.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3V2F_057 | 3V2F | 0.1944 | 0 | A | LSU rRNA | C | 2404 | G | 2405 | U | 2406 | G | 2407 | U | 2408 | G | 2409 | G | 2410 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH |
| 2 | HL_2ZJR_057 | 2ZJR | 0.0000 | 0 | X | LSU rRNA | C | 2383 | G | 2384 | U | 2385 | G | 2386 | U | 2387 | G | 2388 | G | 2389 | A | 2390 | A | 2391 | G | 2392 | cWW | tSH |
| 3 | HL_2QBG_061 | 2QBG | 0.2287 | 0 | B | LSU rRNA | U | 2404 | G | 2405 | A | 2406 | A | 2407 | U | 2408 | G | 2409 | G | 2410 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGUGGAAG | 2 |
| UGAAUGGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGUGGAA | 2 |
| GAAUGGAA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_90579.1 | Only in the parent motif |
|---|---|---|---|
| HL_32280.1 Compare | HL_2QBG_061, HL_2ZJR_057 | HL_3V2F_057 | HL_3IVK_001, HL_3PYO_059, HL_3IVK_006 |
Children motifs
| Child motif | Common motif instances | Only in HL_90579.1 | Only in the child motif |
|---|---|---|---|
| HL_90579.2 Compare | HL_3V2F_057, HL_2QBG_061 | HL_2ZJR_057 | HL_4IOA_058 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-R-R-R-R-R-R
- Heat map statistics
- Min 0.19 | Avg 0.15 | Max 0.26
Coloring options: