Motif HL_90642.2 Version HL_90642.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_051 | 5TBW | 0.3605 | 3 | 1 | LSU rRNA | G | 2369 | G | 2370 | G | 2371 | G | 2375 | G | 2376 | G | 2377 | C | 2378 | cWW | tWH | |
| 2 | HL_4V8P_133 | 4V8P | 0.3388 | 3 | D1 | LSU rRNA | G | 2364 | G | 2365 | G | 2366 | G | 2370 | G | 2371 | G | 2372 | C | 2373 | cWW | tWH | |
| 3 | HL_4V9F_052 | 4V9F | 0.2381 | 3 | 0 | LSU rRNA | G | 2068 | U | 2069 | G | 2070 | A | 2074 | G | 2075 | U | 2076 | C | 2077 | cWW | tWH | |
| 4 | HL_4Y4O_153 | 4Y4O | 0.0000 | 3 | 2A | LSU rRNA | G | 2027 | U | 2028 | G | 2029 | A | 2033 | U | 2034 | G | 2035 | C | 2036 | cWW | tWH | |
| 5 | HL_4WF9_047 | 4WF9 | 0.1576 | 3 | X | LSU rRNA | G | 2054 | U | 2055 | G | 2056 | A | 2060 | U | 2061 | G | 2062 | C | 2063 | cWW | tWH | |
| 6 | HL_4IOA_049 | 4IOA | 0.4617 | 3 | X | LSU rRNA | G | 2010 | U | 2011 | A | 2012 | A | 2016 | U | 2017 | G | 2018 | C | 2019 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAACGGGC | 2 |
| GUGAAGAUGC | 2 |
| GUGCGGAGUC | 1 |
| GUAAAGAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAACGGG | 2 |
| UGAAGAUG | 2 |
| UGCGGAGU | 1 |
| UAAAGAUG | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-R-tWH-R
- Heat map statistics
- Min 0.11 | Avg 0.30 | Max 0.57
Coloring options: