#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 71-72-4
1 HL_7A0S_0497A0S0.10603X LSU rRNAG2010U2011A2012A2016U2017G2018C2019cWWtWH
2 HL_8VTW_0498VTW0.000031A LSU rRNAG2027U2028G2029A2033U2034G2035C2036cWWtWH
3 HL_4V9F_0524V9F0.167430 LSU rRNAG2068U2069G2070A2074G2075U2076C2077cWWtWH
4 HL_4WF9_0474WF90.17003X LSU rRNAG2054U2055G2056A2060U2061G2062C2063cWWtWH
5 HL_8C3A_0518C3A0.340331 LSU rRNAG2347G2348G2349G2353G2354G2355C2356cWWtWH
6 HL_5TBW_0515TBW0.349631 LSU rRNAG2369G2370G2371G2375G2376G2377C2378cWWtWH

3D structures

Complete motif including flanking bases
SequenceCounts
GUGAAGAUGC2
GGGAACGGGC2
GUAAAGAUGC1
GUGCGGAGUC1
Non-Watson-Crick part of the motif
SequenceCounts
UGAAGAUG2
GGAACGGG2
UAAAGAUG1
UGCGGAGU1

Release history

Release3.873.88
Date2024-08-142024-09-11
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (6)
  • Basepair signature
    cWW-tWH-F-F-F
    Heat map statistics
    Min 0.06 | Avg 0.21 | Max 0.38
    Help

    Coloring options:

    HL_7A0S_049:HL_7A0S_049 = 0HL_7A0S_049:HL_8VTW_049 = 0.106HL_7A0S_049:HL_4V9F_052 = 0.1692HL_7A0S_049:HL_4WF9_047 = 0.1866HL_7A0S_049:HL_8C3A_051 = 0.3712HL_7A0S_049:HL_5TBW_051 = 0.3825HL_8VTW_049:HL_7A0S_049 = 0.106HL_8VTW_049:HL_8VTW_049 = 0HL_8VTW_049:HL_4V9F_052 = 0.1674HL_8VTW_049:HL_4WF9_047 = 0.17HL_8VTW_049:HL_8C3A_051 = 0.3403HL_8VTW_049:HL_5TBW_051 = 0.3496HL_4V9F_052:HL_7A0S_049 = 0.1692HL_4V9F_052:HL_8VTW_049 = 0.1674HL_4V9F_052:HL_4V9F_052 = 0HL_4V9F_052:HL_4WF9_047 = 0.1555HL_4V9F_052:HL_8C3A_051 = 0.3378HL_4V9F_052:HL_5TBW_051 = 0.3506HL_4WF9_047:HL_7A0S_049 = 0.1866HL_4WF9_047:HL_8VTW_049 = 0.17HL_4WF9_047:HL_4V9F_052 = 0.1555HL_4WF9_047:HL_4WF9_047 = 0HL_4WF9_047:HL_8C3A_051 = 0.3369HL_4WF9_047:HL_5TBW_051 = 0.3551HL_8C3A_051:HL_7A0S_049 = 0.3712HL_8C3A_051:HL_8VTW_049 = 0.3403HL_8C3A_051:HL_4V9F_052 = 0.3378HL_8C3A_051:HL_4WF9_047 = 0.3369HL_8C3A_051:HL_8C3A_051 = 0HL_8C3A_051:HL_5TBW_051 = 0.06HL_5TBW_051:HL_7A0S_049 = 0.3825HL_5TBW_051:HL_8VTW_049 = 0.3496HL_5TBW_051:HL_4V9F_052 = 0.3506HL_5TBW_051:HL_4WF9_047 = 0.3551HL_5TBW_051:HL_8C3A_051 = 0.06HL_5TBW_051:HL_5TBW_051 = 0HL_7A0S_049HL_8VTW_049HL_4V9F_052HL_4WF9_047HL_8C3A_051HL_5TBW_051Discrepancy0.000.100.200.30
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