Motif HL_91503.5 Version HL_91503.5 of this group appears in releases 3.87 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 4-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_013 | 7A0S | 0.3938 | 2 | X | LSU rRNA | G | 395 | U | 396 | U | 397 | C | 398 | U | 400 | G | 401 | A | 403 | A | 404 | C | 405 | cWW | ntsS |
| 2 | HL_8VTW_012 | 8VTW | 0.2958 | 2 | 1A | LSU rRNA | G | 382 | U | 383 | U | 384 | C | 385 | U | 387 | G | 388 | A | 390 | G | 391 | C | 392 | cWW | |
| 3 | HL_5J7L_145 | 5J7L | 0.0000 | 2 | DA | LSU rRNA | A | 382 | C | 383 | A | 384 | C | 385 | U | 387 | G | 388 | U | 390 | A | 391 | U | 392 | cWW | |
| 4 | HL_4WF9_013 | 4WF9 | 0.7671 | 4 | X | LSU rRNA | A | 427 | G | 428 | A | 430 | C | 431 | U | 433 | G | 434 | A | 436 | A | 437 | U | 439 | cWW | ntsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUCGUGAAAC | 1 |
| GUUCGUGGAGC | 1 |
| ACACGUGGUAU | 1 |
| AGCACGUGAAAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCGUGAAA | 1 |
| UUCGUGGAG | 1 |
| CACGUGGUA | 1 |
| GCACGUGAAAU | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.27 | Avg 0.45 | Max 0.95
Coloring options: