Motif HL_91907.1 Version HL_91907.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3AL0_002 | 3AL0 | 0.8896 | 2 | E | tRNA | A | 31 | C | 32 | C | 34 | U | 35 | G | 36 | A | 38 | U | 39 | cWW | cWW | ||
| 2 | HL_3FO4_002 | 3FO4 | 0.4709 | 1 | A | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | ||
| 3 | HL_1Y26_002 | 1Y26 | 0.0000 | 1 | Purine riboswitch | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | |
| 4 | HL_3PYO_005 | 3PYO | 0.0976 | 0 | A | LSU rRNA | C | 155 | U | 161 | U | 162 | U | 163 | U | 164 | U | 165 | G | 171 | cWW | |||
| 5 | HL_3LA5_002 | 3LA5 | 0.2006 | 1 | Purine riboswitch | A | Purine riboswitch | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUCUAC | 2 |
| ACUCUGGAU | 1 |
| CUUUUUG | 1 |
| GCUUCCAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUCUA | 2 |
| CUCUGGA | 1 |
| UUUUU | 1 |
| CUUCCA | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_91907.1 | Only in the child motif |
|---|---|---|---|
| HL_52574.1 Compare | HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002 | HL_3PYO_005 | HL_2GDI_001, HL_3V2F_060, HL_2GDI_003, HL_2ZJR_060, HL_1FJG_014, HL_2XZM_029, HL_4A1B_063, HL_2QBG_064, HL_1FJG_002, HL_3U5H_064, HL_2AW7_014 |
- Annotations
-
- (3)
- Purine riboswitch (2)
- Basepair signature
- Heat map statistics
- Min 0.10 | Avg 0.44 | Max 0.93
Coloring options: