Motif HL_52574.1 Version HL_52574.1 of this group appears in releases 0.3 to 1.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7	2-5	2-6
1	HL_4A1B_063	4A1B	0.2623	0	1	26S RRNA	U	2908	U	2909	G	2910	U	2911	U	2912	C	2913	A	2914	cWW
2	HL_3U5H_064	3U5H	0.2358	0	5	25S rRNA	U	2920	U	2921	G	2922	U	2923	U	2924	C	2925	A	2926	cWW
3	HL_2QBG_064	2QBG	0.1922	0	B	23S rRNA	C	2551	U	2552	G	2553	U	2554	U	2555	C	2556	G	2557	cWW
4	HL_3V2F_060	3V2F	0.2036	0	A	23S Ribosomal RNA	C	2551	U	2552	G	2553	U	2554	U	2555	C	2556	G	2557	cWW
5	HL_2ZJR_060	2ZJR	0.0000	0	X	LSU rRNA	C	2530	U	2531	G	2532	U	2533	U	2534	C	2535	G	2536	cWW
6	HL_2XZM_029	2XZM	0.6532	0	A	18S RRNA	U	1330	A	1331	A	1332	A	1333	U	1334	A	1335	A	1336	cWW
7	HL_1FJG_002	1FJG	0.5932	0	A	SSU rRNA	G	80	U	81	U	82	U	83	U	84	A	88	C	89	cWW		ntSH
8	HL_3AL0_002	3AL0	0.7748	2	E	tRNA	A	31	C	32	C	34	U	35	G	36	A	38	U	39	cWW		cWW
9	HL_1Y26_002	1Y26	0.8149	1	X	Purine riboswitch	G	46	U	47	U	49	C	50	U	51	A	52	C	53	cWW	ntWH
10	HL_3FO4_002	3FO4	0.8394	1	A	Guanine riboswitch C74U mutant	G	46	U	47	U	49	C	50	U	51	A	52	C	53	cWW	ntWH
11	HL_3LA5_002	3LA5	0.7515	1	A	Purine riboswitch	G	46	C	47	U	49	C	50	C	51	A	52	C	53	cWW
12	HL_2GDI_001	2GDI	0.6901	0	X	TPP riboswitch	C	27	U	28	G	29	C	30	G	31	U	32	G	33	cWW		tWW
13	HL_2GDI_003	2GDI	0.7017	0	Y	TPP riboswitch	C	27	U	28	G	29	C	30	G	31	U	32	G	33	cWW		ntWW
14	HL_2AW7_014	2AW7	0.7310	0	A	16S ribosomal RNA	G	617	C	618	U	619	C	620	A	621	A	622	C	623	cWW		ntWH
15	HL_1FJG_014	1FJG	0.7473	0	A	SSU rRNA	G	617	C	618	U	619	C	620	A	621	A	622	C	623	cWW		ntWH

3D structures

Complete motif including flanking bases

Sequence	Counts
CUGUUCG	3
UUGUUCA	2
GUUUCUAC	2
CUGCGUG	2
GCUCAAC	2
UAAAUAA	1
GUUUUAC	1
ACUCUGGAU	1
GCUUCCAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGUUC	5
UUUCUA	2
UGCGU	2
CUCAA	2
AAAUA	1
UUUUA	1
CUCUGGA	1
CUUCCA	1

Release history

Release	0.3	0.4	0.5	0.6	0.7	0.8	1.0
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04
Status	> 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in HL_52574.1	Only in the parent motif
HL_32207.1 Compare	HL_2GDI_001, HL_2GDI_003, HL_2ZJR_060, HL_2XZM_029, HL_2QBG_064, HL_1FJG_002	HL_3V2F_060, HL_1FJG_014, HL_4A1B_063, HL_3U5H_064, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014	HL_3PYO_062, HL_2A64_006, HL_2ZJR_051, HL_3R4F_002, HL_3PYO_053, HL_3O58_055, HL_3O58_064, HL_1S72_055, HL_2QBG_055
HL_91907.1 Compare	HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002	HL_2GDI_001, HL_3V2F_060, HL_2GDI_003, HL_2ZJR_060, HL_1FJG_014, HL_2XZM_029, HL_4A1B_063, HL_2QBG_064, HL_1FJG_002, HL_3U5H_064, HL_2AW7_014	HL_3PYO_005
HL_03576.1 Compare	HL_1FJG_014, HL_2AW7_014	HL_2GDI_001, HL_3V2F_060, HL_2GDI_003, HL_2ZJR_060, HL_2XZM_029, HL_4A1B_063, HL_2QBG_064, HL_1FJG_002, HL_3U5H_064, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002	HL_1L2X_001, HL_2XZM_033, HL_2A43_001

Children motifs

Child motif	Common motif instances	Only in HL_52574.1	Only in the child motif
HL_52574.2 Compare	HL_2GDI_001, HL_4A1B_063, HL_2GDI_003, HL_1FJG_014, HL_2XZM_029, HL_3V2F_060, HL_2QBG_064, HL_1FJG_002, HL_3U5H_064, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014	HL_2ZJR_060	HL_4IOA_061

Annotations: (15)
Basepair signature: cWW-tWH-R-R-R
Heat map statistics: Min 0.06 | Avg 0.59 | Max 0.91

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