Motif HL_92229.1 Version HL_92229.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_039 | 4WF9 | 0.4014 | 2 | X | LSU rRNA | A | 1673 | U | 1674 | A | 1676 | G | 1677 | A | 1679 | U | 1680 | U | 1681 | cWW | cwW | |
| 2 | HL_5TBW_058 | 5TBW | 0.0000 | 2 | 1 | LSU rRNA | U | 2724 | U | 2725 | A | 2727 | U | 2729 | G | 2730 | U | 2731 | G | 2732 | cWW | ||
| 3 | HL_4V88_220 | 4V88 | 0.7788 | 2 | A6 | SSU rRNA | G | 1594 | U | 1595 | A | 1597 | U | 1598 | C | 1599 | A | 1600 | C | 1602 | cWW | ntWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUGAGAAUU | 1 |
| UUCAGUGUG | 1 |
| GUCAUCAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAGAAU | 1 |
| UCAGUGU | 1 |
| UCAUCAG | 1 |
- Annotations
- Basepair signature
- cWW-cWW-F-F-F
- Heat map statistics
- Min 0.40 | Avg 0.44 | Max 0.82
Coloring options: