Motif HL_93212.3 Version HL_93212.3 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_220 | 4V88 | 0.8491 | 1 | A6 | SSU rRNA | G | 1594 | U | 1595 | C | 1596 | A | 1597 | U | 1598 | C | 1599 | A | 1600 | C | 1602 | cWW | ntWW | ||
| 2 | HL_5TBW_037 | 5TBW | 0.0000 | 1 | 1 | LSU rRNA | G | 1680 | U | 1681 | U | 1682 | A | 1683 | U | 1684 | C | 1685 | U | 1686 | U | 1688 | cWW | |||
| 3 | HL_5T83_003 | 5T83 | 0.9223 | 1 | A | Guanidine-I riboswitch | G | 77 | A | 78 | U | 79 | A | 80 | A | 81 | A | 82 | A | 83 | C | 85 | cWW | ntWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCAUCAGC | 1 |
| GUUAUCUUU | 1 |
| GAUAAAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAUCAG | 1 |
| UUAUCUU | 1 |
| AUAAAAG | 1 |
- Annotations
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.85 | Avg 0.61 | Max 0.95
Coloring options: