Motif HL_93538.1 Version HL_93538.1 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V8P_107 | 4V8P | 0.8426 | 0 | D1 | LSU rRNA | C | 1050 | C | 1051 | A | 1052 | A | 1053 | G | 1054 | cWW | |
| 2 | HL_5TBW_018 | 5TBW | 0.4290 | 1 | 1 | LSU rRNA | G | 763 | U | 764 | U | 766 | U | 767 | C | 768 | cWW | cwW |
| 3 | HL_4IOA_016 | 4IOA | 0.0000 | 4 | X | LSU rRNA | C | 552 | C | 553 | U | 557 | C | 559 | G | 560 | cWW | ncWB |
| 4 | HL_4V88_190 | 4V88 | 0.7445 | 1 | A6 | SSU rRNA | C | 230 | U | 231 | C | 233 | G | 234 | G | 235 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAAG | 1 |
| GUCUUC | 1 |
| CCUUAUGCG | 1 |
| CUUCGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA | 1 |
| UCUU | 1 |
| CUUAUGC | 1 |
| UUCG | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: