Motif HL_94376.2 Version HL_94376.2 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1ZCI_001 | 1ZCI | 0.0000 | 0 | Pseudoknot geometry | A | RNA (23-mer) | G | 7 | A | 8 | A | 9 | G | 10 | U | 11 | G | 12 | C | 13 | A | 14 | C | 15 | A | 16 | C | 17 | cWW |
| 2 | HL_1ZCI_002 | 1ZCI | 0.0658 | 0 | Pseudoknot geometry | B | RNA (23-mer) | G | 7 | A | 8 | A | 9 | G | 10 | U | 11 | G | 12 | C | 13 | A | 14 | C | 15 | A | 16 | C | 17 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGUGCACAC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGUGCACA | 2 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry (2)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.03 | Max 0.07
Coloring options: