Motif HL_94578.1 Version HL_94578.1 of this group appears in releases 0.3 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2CV1_004 | 2CV1 | 0.0000 | 4 | D | tRNA | U | 513 | A | 514 | G | 515 | U | 520 | A | 521 | G | 522 | cWW | cWS | ntSH |
| 2 | HL_2DER_004 | 2DER | 0.5513 | 5 | D | tRNA | U | 13 | A | 14 | G | 15 | C | 20 | A | 21 | G | 22 | cWW | cWS | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGCGGUUAG | 1 |
| UAGAGGCCCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCGGUUA | 1 |
| AGAGGCCCA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_94578.1 | Only in the parent motif |
|---|---|---|---|
| HL_70609.1 Compare | HL_2CV1_004 | HL_2DER_004 | HL_2CV1_001 |
| HL_86601.1 Compare | HL_2DER_004 | HL_2CV1_004 | HL_2DER_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_94578.1 | Only in the child motif |
|---|---|---|---|
| HL_94578.2 Compare | HL_2CV1_004, HL_2DER_004 | HL_1VX2_034 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWS-R-R
- Heat map statistics
- Min 0.55 | Avg 0.28 | Max 0.55
Coloring options: