Motif HL_94578.2 Version HL_94578.2 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VX2_034 | 1VX2 | 0.5422 | 2 | 5 | A/P tRNA | C | 13 | A | 14 | G | 15 | U | 20 | A | 21 | G | 22 | ncWS | ||
| 2 | HL_2CV1_004 | 2CV1 | 0.0000 | 4 | D | tRNA | U | 513 | A | 514 | G | 515 | U | 520 | A | 521 | G | 522 | cWW | cWS | ntSH |
| 3 | HL_2DER_004 | 2DER | 0.5513 | 5 | D | tRNA | U | 13 | A | 14 | G | 15 | C | 20 | A | 21 | G | 22 | cWW | cWS | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGGGUAG | 1 |
| UAGCGGUUAG | 1 |
| UAGAGGCCCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGGGUA | 1 |
| AGCGGUUA | 1 |
| AGAGGCCCA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_94578.2 | Only in the parent motif |
|---|---|---|---|
| HL_94578.1 Compare | HL_2CV1_004, HL_2DER_004 | HL_1VX2_034 |
Children motifs
| Child motif | Common motif instances | Only in HL_94578.2 | Only in the child motif |
|---|---|---|---|
| HL_94578.3 Compare | HL_2CV1_004, HL_2DER_004 | HL_1VX2_034 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWS-R-R
- Heat map statistics
- Min 0.54 | Avg 0.41 | Max 0.74
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