Motif HL_94618.1 Version HL_94618.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | 2-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3PYO_029 | 3PYO | 0.3446 | 0 | A | 23S ribosomal RNA | G | 1055 | G | 1056 | C | 1104 | cWW | |
| 2 | HL_2BQ5_002 | 2BQ5 | 0.2041 | 3 | S | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | C | 13||||P_1 | ncWW | |
| 3 | HL_2C50_001 | 2C50 | 0.2675 | 3 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | C | 13||||P_1 | cWW | |
| 4 | HL_5MSF_002 | 5MSF | 0.2532 | 3 | S | RNA (18-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 12||||P_1 | cWW | |
| 5 | HL_1Y0Q_002 | 1Y0Q | 0.1762 | 0 | A | Group I catalytic intron | U | 61 | A | 62 | A | 78 | cWW | |
| 6 | HL_1U1Y_001 | 1U1Y | 0.1839 | 3 | R | RNA (17-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 12||||P_1 | cWW | |
| 7 | HL_2IZM_002 | 2IZM | 0.1253 | 3 | S | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | C | 13||||P_1 | cWW | |
| 8 | HL_2IZM_001 | 2IZM | 0.1265 | 3 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | C | 13||||P_1 | cWW | |
| 9 | HL_2C50_002 | 2C50 | 0.1013 | 3 | S | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | C | 13||||P_1 | cWW | |
| 10 | HL_5MSF_001 | 5MSF | 0.0966 | 3 | R | RNA (18-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 12||||P_1 | cWW | |
| 11 | HL_2BQ5_001 | 2BQ5 | 0.0000 | 3 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | C | 13||||P_1 | cWW | |
| 12 | HL_1ZDJ_002 | 1ZDJ | 0.2179 | 3 | S | RNA (8-mer) | G | 8||||P_1 | A | 9||||P_1 | C | 13||||P_1 | cWW | |
| 13 | HL_1U1Y_002 | 1U1Y | 0.1447 | 3 | S | RNA (17-mer) | G | 107||||P_1 | A | 108||||P_1 | C | 112||||P_1 | cWW | |
| 14 | HL_7MSF_001 | 7MSF | 0.1793 | 3 | R | RNA (14-mer) | C | 5||||P_1 | A | 6||||P_1 | G | 10||||P_1 | cWW | |
| 15 | HL_2IZN_002 | 2IZN | 0.1141 | 3 | S | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | C | 13||||P_1 | cWW | |
| 16 | HL_1NBS_005 | 1NBS | 0.1331 | 1 | B | RNase P class B | C | 118 | U | 119 | G | 125 | cWW | |
| 17 | HL_1S72_027 | 1S72 | 0.2613 | 0 | 0 | LSU rRNA | G | 969 | U | 970 | C | 999 | cWW | ncWW |
| 18 | HL_7MSF_002 | 7MSF | 0.2045 | 3 | S | RNA (14-mer) | C | 5||||P_1 | A | 6||||P_1 | G | 10||||P_1 | cWW | |
| 19 | HL_3ICQ_004 | 3ICQ | 0.2752 | 0 | E | RNA (62-MER) | C | 27 | C | 28 | G | 43 | cWW | |
| 20 | HL_2IZN_001 | 2IZN | 0.4995 | 3 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | C | 13||||P_1 | cWW | |
| 21 | HL_2XZM_012 | 2XZM | 0.3577 | 4 | A | 18S RRNA | U | 442 | A | 443 | A | 448 | cWW | |
| 22 | HL_1ZDJ_001 | 1ZDJ | 0.4622 | 3 | R | RNA (8-mer) | G | 8||||P_1 | A | 9||||P_1 | C | 13||||P_1 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUCAC | 8 |
| GAUUAC | 4 |
| GAUAAC | 2 |
| CAACAG | 2 |
| GGC | 1 |
| UAA | 1 |
| CUUG | 1 |
| GUC | 1 |
| CCG | 1 |
| UAAUUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUCA | 8 |
| AUUA | 4 |
| AUAA | 2 |
| AACA | 2 |
| G | 1 |
| A | 1 |
| UU | 1 |
| U | 1 |
| C | 1 |
| AAUUC | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_94618.1 | Only in the child motif |
|---|---|---|---|
| HL_94618.2 Compare | HL_2IZM_001, HL_1ZDJ_002, HL_2IZM_002, HL_2C50_002, HL_2C50_001, HL_1ZDJ_001, HL_5MSF_001, HL_5MSF_002, HL_2XZM_012, HL_1U1Y_001, HL_2BQ5_002, HL_2BQ5_001, HL_1U1Y_002, HL_2IZN_002, HL_2IZN_001, HL_7MSF_002, HL_7MSF_001 | HL_1Y0Q_002, HL_1S72_027, HL_1NBS_005, HL_3ICQ_004, HL_3PYO_029 |
Coloring options: