Motif HL_94651.2 Version HL_94651.2 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | 3-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5KK5_001 | 5KK5 | 0.0000 | 2 | B | RNA (40-MER) | C | -11 | U | -10 | U | -8 | G | -6 | cWW | ncWS | ||
| 2 | HL_5F5H_002 | 5F5H | 0.5960 | 4 | D | RNA (21-mer) | C | 8 | G | 9 | A | 14 | G | 15 | cWW | tsS | ||
| 3 | HL_5F5H_001 | 5F5H | 0.6242 | 4 | C | RNA (21-mer) | C | 8 | G | 9 | A | 14 | G | 15 | cWW | tsS | ||
| 4 | HL_5F5F_003 | 5F5F | 0.6612 | 4 | F | RNA (20-mer) | C | 7 | G | 8 | A | 13 | G | 14 | cWW | tsS | ||
| 5 | HL_5F5F_001 | 5F5F | 0.6679 | 4 | B | RNA (20-mer) | C | 7 | G | 8 | A | 13 | G | 14 | cWW | tsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUUCUAG | 2 |
| CGUUUUAG | 2 |
| CUCUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUCUA | 2 |
| GUUUUA | 2 |
| UCUU | 1 |
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