RNA 3D Hub //

Motif HL_94651.2 Version HL_94651.2 of this group appears in releases 3.77 to 3.79

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 41-42-33-4
1 HL_5KK5_0015KK50.00002BRNA (40-MER)C-11U-10U-8G-6cWWncWS
2 HL_5F5H_0025F5H0.59604DRNA (21-mer)C8G9A14G15cWWtsS
3 HL_5F5H_0015F5H0.62424CRNA (21-mer)C8G9A14G15cWWtsS
4 HL_5F5F_0035F5F0.66124FRNA (20-mer)C7G8A13G14cWWtsS
5 HL_5F5F_0015F5F0.66794BRNA (20-mer)C7G8A13G14cWWtsS

3D structures

Complete motif including flanking bases
SequenceCounts
CGUUCUAG2
CGUUUUAG2
CUCUUG1
Non-Watson-Crick part of the motif
SequenceCounts
GUUCUA2
GUUUUA2
UCUU1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusUpdated, 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (5)
    • Basepair signature
    cWW-tSS
    Heat map statistics
    Min 0.04 | Avg 0.24 | Max 0.67
    Help

    Coloring options:

    HL_5KK5_001:HL_5KK5_001 = 0HL_5KK5_001:HL_5F5H_002 = 0.596HL_5KK5_001:HL_5F5H_001 = 0.6242HL_5KK5_001:HL_5F5F_003 = 0.6612HL_5KK5_001:HL_5F5F_001 = 0.6679HL_5F5H_002:HL_5KK5_001 = 0.596HL_5F5H_002:HL_5F5H_002 = 0HL_5F5H_002:HL_5F5H_001 = 0.061HL_5F5H_002:HL_5F5F_003 = 0.1108HL_5F5H_002:HL_5F5F_001 = 0.1159HL_5F5H_001:HL_5KK5_001 = 0.6242HL_5F5H_001:HL_5F5H_002 = 0.061HL_5F5H_001:HL_5F5H_001 = 0HL_5F5H_001:HL_5F5F_003 = 0.0722HL_5F5H_001:HL_5F5F_001 = 0.076HL_5F5F_003:HL_5KK5_001 = 0.6612HL_5F5F_003:HL_5F5H_002 = 0.1108HL_5F5F_003:HL_5F5H_001 = 0.0722HL_5F5F_003:HL_5F5F_003 = 0HL_5F5F_003:HL_5F5F_001 = 0.0366HL_5F5F_001:HL_5KK5_001 = 0.6679HL_5F5F_001:HL_5F5H_002 = 0.1159HL_5F5F_001:HL_5F5H_001 = 0.076HL_5F5F_001:HL_5F5F_003 = 0.0366HL_5F5F_001:HL_5F5F_001 = 0HL_5KK5_001HL_5F5H_002HL_5F5H_001HL_5F5F_003HL_5F5F_001Discrepancy0.000.100.200.300.400.500.60
    Copyright 2025 BGSU RNA group. Page generated in 0.0947 s