Motif HL_95074.1 Version HL_95074.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2CZJ_003 | 2CZJ | 0.9672 | 1 | D | G | 25 | U | 26 | C | 28 | G | 29 | C | 30 | cWW | ||
| 2 | HL_2CZJ_007 | 2CZJ | 0.9300 | 1 | UNCG variation | H | G | 25 | U | 26 | C | 28 | G | 29 | C | 30 | cWW | |
| 3 | HL_1P6V_001 | 1P6V | 0.7515 | 1 | UNCG variation | B | C | 26 | U | 27 | C | 29 | G | 30 | G | 31 | cWW | |
| 4 | HL_2NUE_001 | 2NUE | 0.6967 | 1 | GNRA related | C | C | 21 | G | 22 | A | 24 | A | 25 | G | 26 | cWW | ncSW |
| 5 | HL_1P6V_003 | 1P6V | 0.7748 | 1 | D | C | 26 | U | 27 | C | 29 | G | 30 | G | 31 | cWW | ||
| 6 | HL_2AW7_023 | 2AW7 | 0.7751 | 1 | A | C | 1028 | U | 1029 | C | 1031 | G | 1032 | G | 1033 | cWW | ||
| 7 | HL_3O58_015 | 3O58 | 0.8090 | 2 | 1 | U | 687 | G | 688 | A | 690 | A | 692 | A | 693 | cWW | tSH | |
| 8 | HL_3O30_010 | 3O30 | 0.8073 | 1 | 1 | C | 414 | C | 415 | A | 417 | G | 418 | G | 419 | cWW | ntSW | |
| 9 | HL_3ADC_002 | 3ADC | 0.0000 | 0 | C | A | 31 | C | 32 | G | 37 | A | 38 | U | 39 | cWW | ncWB |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUCGG | 3 |
| GUUCGC | 2 |
| CGCAAG | 1 |
| UGUAAAA | 1 |
| CCAAGG | 1 |
| ACGAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCG | 5 |
| GCAA | 1 |
| GUAAA | 1 |
| CAAG | 1 |
| CGA | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_95074.1 | Only in the child motif |
|---|---|---|---|
| HL_95074.2 Compare | HL_1P6V_003, HL_2NUE_001, HL_1P6V_001, HL_2CZJ_007, HL_2CZJ_003, HL_3O58_015 | HL_2AW7_023, HL_3ADC_002, HL_3O30_010 | HL_2ZJR_016 |
| HL_95727.2 Compare | HL_2AW7_023, HL_3O30_010 | HL_1P6V_003, HL_2NUE_001, HL_1P6V_001, HL_2CZJ_007, HL_2CZJ_003, HL_3ADC_002, HL_3O58_015 | HL_2QUX_005, HL_2QUX_004, HL_2QUX_006, HL_2QUX_001, HL_2QUX_003, HL_2QUX_002 |
- Annotations
-
- (6)
- UNCG variation (2)
- GNRA related (1)
- Basepair signature
- Heat map statistics
- Min 0.01 | Avg 0.63 | Max 0.97
Coloring options: