Motif HL_95074.2 Version HL_95074.2 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2CZJ_007 | 2CZJ | 0.0000 | 0 | UNCG variation | H | tmRNA (63-MER) | G | 25 | U | 26 | U | 27 | C | 28 | G | 29 | C | 30 | cWW | |
| 2 | HL_2NUE_001 | 2NUE | 0.0180 | 0 | GNRA related | C | 46-MER | C | 21 | G | 22 | C | 23 | A | 24 | A | 25 | G | 26 | cWW | ncSW |
| 3 | HL_1P6V_001 | 1P6V | 0.5764 | 0 | UNCG variation | B | 45-MER | C | 26 | U | 27 | U | 28 | C | 29 | G | 30 | G | 31 | cWW | |
| 4 | HL_1P6V_003 | 1P6V | 0.6163 | 0 | D | 45-MER | C | 26 | U | 27 | U | 28 | C | 29 | G | 30 | G | 31 | cWW | ||
| 5 | HL_2CZJ_003 | 2CZJ | 0.6182 | 0 | D | tmRNA (63-MER) | G | 25 | U | 26 | U | 27 | C | 28 | G | 29 | C | 30 | cWW | ||
| 6 | HL_2ZJR_016 | 2ZJR | 0.9822 | 3 | X | LSU rRNA | C | 552 | C | 553 | A | 556 | U | 557 | C | 559 | G | 560 | cWW | ncWB | |
| 7 | HL_3O58_015 | 3O58 | 0.9846 | 1 | 1 | 25S ribosomal RNA | U | 687 | G | 688 | U | 689 | A | 690 | A | 692 | A | 693 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUCGC | 2 |
| CUUCGG | 2 |
| CGCAAG | 1 |
| CCUUAUGCG | 1 |
| UGUAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCG | 4 |
| GCAA | 1 |
| CUUAUGC | 1 |
| GUAAA | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_95074.2 | Only in the parent motif |
|---|---|---|---|
| HL_95074.1 Compare | HL_1P6V_003, HL_2NUE_001, HL_1P6V_001, HL_2CZJ_007, HL_2CZJ_003, HL_3O58_015 | HL_2ZJR_016 | HL_2AW7_023, HL_3ADC_002, HL_3O30_010 |
| HL_03266.1 Compare | HL_2ZJR_016 | HL_1P6V_003, HL_2NUE_001, HL_1P6V_001, HL_2CZJ_007, HL_2CZJ_003, HL_3O58_015 |
Children motifs
| Child motif | Common motif instances | Only in HL_95074.2 | Only in the child motif |
|---|---|---|---|
| HL_48116.1 Compare | HL_2ZJR_016 | HL_1P6V_003, HL_2NUE_001, HL_1P6V_001, HL_2CZJ_007, HL_2CZJ_003, HL_3O58_015 | HL_1Y0Q_006, HL_3DIR_004, HL_2QBG_009 |
| HL_42077.2 Compare | HL_1P6V_001 | HL_1P6V_003, HL_2NUE_001, HL_2CZJ_007, HL_2CZJ_003, HL_3O58_015, HL_2ZJR_016 | HL_1S72_019, HL_2QBG_020 |
| HL_39895.1 Compare | HL_2NUE_001 | HL_1P6V_003, HL_1P6V_001, HL_2CZJ_007, HL_2CZJ_003, HL_3O58_015, HL_2ZJR_016 | HL_1UN6_003, HL_4A1B_014, HL_2HW8_001, HL_1FJG_009, HL_1F7Y_001, HL_1F7Y_002, HL_3V7E_005, HL_3U5F_011, HL_2AW7_009, HL_1FJG_011, HL_1NBS_006, HL_1FJG_031, HL_2AW7_005, HL_1YKV_002, HL_1I6U_002, HL_3V2F_049, HL_3V2F_040, HL_2XZM_011, HL_3U5H_043, HL_4A1B_042, HL_3U4M_001, HL_3G78_008, HL_2AW7_023, HL_3U5F_005, HL_1S72_044, HL_2QBG_006, HL_3U5H_012, HL_2ZJR_042, HL_2QBG_040, HL_2QBG_044, HL_2AW7_011, HL_2AW7_031 |
- Annotations
-
- (4)
- UNCG variation (2)
- GNRA related (1)
- Basepair signature
- Heat map statistics
- Min 0.01 | Avg 0.59 | Max 0.98
Coloring options: