Motif HL_95727.2 Version HL_95727.2 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QUX_003 | 2QUX | 0.1130 | 3 | I | G | 10 | A | 11 | A | 13 | G | 15 | C | 17 | cWW | |
| 2 | HL_2QUX_001 | 2QUX | 0.0734 | 3 | C | G | 10 | A | 11 | A | 13 | G | 15 | C | 17 | cWW | |
| 3 | HL_2QUX_002 | 2QUX | 0.0000 | 3 | F | G | 10 | A | 11 | A | 13 | G | 15 | C | 17 | cWW | |
| 4 | HL_2QUX_006 | 2QUX | 0.0793 | 3 | R | G | 10 | A | 11 | A | 13 | G | 15 | C | 17 | cWW | |
| 5 | HL_2QUX_004 | 2QUX | 0.0853 | 3 | L | G | 10 | A | 11 | A | 13 | G | 15 | C | 17 | cWW | |
| 6 | HL_2QUX_005 | 2QUX | 0.1068 | 3 | O | G | 10 | A | 11 | A | 13 | G | 15 | C | 17 | cWW | |
| 7 | HL_3O30_010 | 3O30 | 0.9316 | 1 | 1 | C | 414 | C | 415 | A | 417 | G | 418 | G | 419 | cWW | ntSW |
| 8 | HL_2AW7_023 | 2AW7 | 1.0332 | 1 | A | C | 1028 | U | 1029 | C | 1031 | G | 1032 | G | 1033 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAUGGC | 6 |
| CCAAGG | 1 |
| CUUCGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAUGG | 6 |
| CAAG | 1 |
| UUCG | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_95727.2 | Only in the parent motif |
|---|---|---|---|
| HL_95727.1 Compare | HL_2QUX_005, HL_2QUX_004, HL_2QUX_006, HL_2QUX_001, HL_2QUX_003, HL_2QUX_002 | HL_2AW7_023, HL_3O30_010 | HL_1OOA_001 |
| HL_95074.1 Compare | HL_2AW7_023, HL_3O30_010 | HL_2QUX_005, HL_2QUX_004, HL_2QUX_006, HL_2QUX_001, HL_2QUX_003, HL_2QUX_002 | HL_1P6V_003, HL_2NUE_001, HL_1P6V_001, HL_2CZJ_007, HL_2CZJ_003, HL_3ADC_002, HL_3O58_015 |
Children motifs
| Child motif | Common motif instances | Only in HL_95727.2 | Only in the child motif |
|---|---|---|---|
| HL_14013.1 Compare | HL_2QUX_002 | HL_2AW7_023, HL_2QUX_005, HL_2QUX_004, HL_2QUX_006, HL_2QUX_001, HL_2QUX_003, HL_3O30_010 | HL_3U5H_002 |
| HL_39895.1 Compare | HL_2AW7_023 | HL_2QUX_005, HL_2QUX_004, HL_2QUX_006, HL_2QUX_001, HL_2QUX_003, HL_2QUX_002, HL_3O30_010 | HL_1UN6_003, HL_4A1B_014, HL_2HW8_001, HL_1FJG_009, HL_1F7Y_001, HL_1F7Y_002, HL_3V7E_005, HL_2NUE_001, HL_2AW7_009, HL_1FJG_011, HL_1NBS_006, HL_1FJG_031, HL_2AW7_005, HL_1YKV_002, HL_1I6U_002, HL_3V2F_049, HL_3V2F_040, HL_3U5F_011, HL_2XZM_011, HL_3U5H_043, HL_4A1B_042, HL_3U4M_001, HL_3G78_008, HL_3U5F_005, HL_1S72_044, HL_2QBG_006, HL_3U5H_012, HL_2ZJR_042, HL_2QBG_040, HL_2QBG_044, HL_2AW7_011, HL_2AW7_031 |
Coloring options: