Motif HL_42077.2 Version HL_42077.2 of this group appears in releases 0.3 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S72_019 | 1S72 | 0.6442 | 2 | 0 | G | 670 | A | 671 | U | 673 | U | 675 | C | 676 | cWW | tSH | |
| 2 | HL_2QBG_020 | 2QBG | 0.0000 | 2 | B | C | 611 | G | 612 | A | 614 | A | 616 | G | 617 | cWW | tSH | |
| 3 | HL_1P6V_001 | 1P6V | 0.8189 | 1 | UNCG variation | B | C | 26 | U | 27 | C | 29 | G | 30 | G | 31 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGUAUC | 1 |
| CGAAUAG | 1 |
| CUUCGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUAU | 1 |
| GAAUA | 1 |
| UUCG | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_42077.2 | Only in the parent motif |
|---|---|---|---|
| HL_42077.1 Compare | HL_1S72_019, HL_2QBG_020 | HL_1P6V_001 | |
| HL_95074.2 Compare | HL_1P6V_001 | HL_1S72_019, HL_2QBG_020 | HL_1P6V_003, HL_2NUE_001, HL_2CZJ_007, HL_2CZJ_003, HL_3O58_015, HL_2ZJR_016 |
Children motifs
| Child motif | Common motif instances | Only in HL_42077.2 | Only in the child motif |
|---|---|---|---|
| HL_42077.3 Compare | HL_1S72_019, HL_2QBG_020 | HL_1P6V_001 | |
| HL_84258.1 Compare | HL_1P6V_001 | HL_1S72_019, HL_2QBG_020 | HL_1S72_007, HL_4NVV_008 |
- Annotations
-
- (2)
- UNCG variation (1)
- Basepair signature
- cWW-tSH-R
- Heat map statistics
- Min 0.64 | Avg 0.51 | Max 0.83
Coloring options: