Motif HL_95265.1 Version HL_95265.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4R4V_005 | 4R4V | 0.0000 | 1 | Anticodon loop related | A | C | 626||||7_556 | G | 627||||7_556 | U | 628||||7_556 | G | 630||||7_556 | U | 631||||7_556 | C | 632||||7_556 | G | 633||||7_556 | G | 634||||7_556 | cWW | tSH |
| 2 | HL_4R4V_001 | 4R4V | 0.0000 | 1 | Anticodon loop related | A | C | 626 | G | 627 | U | 628 | G | 630 | U | 631 | C | 632 | G | 633 | G | 634 | cWW | tSH |
| 3 | HL_5IBB_222 | 5IBB | 0.6421 | 1 | tRNA anticodon loop (H) | 3L | C | 31 | C | 32 | U | 33 | A | 35 | C | 36 | A | 37 | A | 38 | G | 39 | cWW | ntSH |
| 4 | HL_2DER_005 | 2DER | 0.7027 | 1 | D | C | 31 | C | 32 | U | 33 | U | 35 | C | 36 | A | 37 | C | 38 | G | 39 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUCGUCGG | 2 |
| CCUUACAAG | 1 |
| CCUUUCACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUCGUCG | 2 |
| CUUACAA | 1 |
| CUUUCAC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Anticodon loop related (2)
- (1)
- tRNA anticodon loop (H) (1)
- Basepair signature
- cWW-tSH-R-R-R-R
- Heat map statistics
- Min 0.64 | Avg 0.42 | Max 0.70
Coloring options: