Motif HL_96366.1 Version HL_96366.1 of this group appears in releases 3.77 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6CZR_101 | 6CZR | 0.1939 | 2 | 1a | SSU rRNA | G | 1338 | A | 1339 | U | 1340 | C | 1341 | A | 1342 | G | 1343 | C | 1344 | A | 1346 | G | 1348 | C | 1349 | cWW | tWW | |
| 2 | HL_4LFB_030 | 4LFB | 0.0000 | 2 | A | SSU rRNA | G | 1356 | A | 1357 | U | 1358 | C | 1359 | A | 1360 | G | 1361 | C | 1361|||A | A | 1363 | G | 1365 | C | 1366 | cWW | cWW | tWW |
| 3 | HL_5J7L_029 | 5J7L | 0.1471 | 1 | AA | SSU rRNA | G | 1356 | A | 1357 | U | 1358 | C | 1359 | A | 1360 | G | 1361 | A | 1362 | A | 1363 | G | 1365 | C | 1366 | cWW | cWW | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUCAGCCAUGC | 2 |
| GAUCAGAAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUCAGCCAUG | 2 |
| AUCAGAAUG | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-tWW-F-F-F-F
- Heat map statistics
- Min 0.15 | Avg 0.13 | Max 0.26
Coloring options: