Motif HL_97756.1 Version HL_97756.1 of this group appears in releases 3.88 to 3.89

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10		11		12		13		14	1-3	1-14	4-14	5-10	6-12	7-11	10-13
1	HL_1MJI_004	1MJI	0.5594	1	D	5S rRNA fragment	A	34	C	35	C	36	C	37	C	38	A	39	U	40	C	42	C	43	G	44	A	45	A	46	C	47	U	48	ncSH	cWW	cWS	cWW	cSW	ntSH	tSW
2	HL_5J7L_215	5J7L	0.1941	1	DB	5S rRNA	A	34	C	35	C	36	C	37	C	38	A	39	U	40	C	42	C	43	G	44	A	45	A	46	C	47	U	48	ncSH	cWW	cWS	cWW	cSW		tSW
3	HL_4V9F_074	4V9F	0.0000	1	9	5S rRNA	U	33	A	34	C	35	C	36	C	37	A	38	U	39	C	41	C	42	G	43	A	44	A	45	C	46	A	47	cSH	cWW	cWS	cWW	cSW		tSW
4	HL_8VTW_208	8VTW	0.0811	1	1B	5S rRNA	U	34	U	35	C	36	C	37	C	38	A	39	U	40	C	42	C	43	G	44	A	45	A	46	C	47	A	48	cSH	cWW	cWS	cWW	cSW		tSW
5	HL_5NS3_003	5NS3	0.0962	1	C	double-stranded RNA	A	34	C	35	C	36	C	37	C	38	A	39	U	40	C	42	C	43	G	44	A	45	A	46	C	47	U	48	ncSH	cWW	cWS	cWW	cSW		tSW
6	HL_4WF9_070	4WF9	0.1729	1	Y	5S rRNA	U	32	U	33	C	34	C	35	C	36	A	37	U	38	C	40	C	41	G	42	A	43	A	44	C	45	A	46		cWW	ncWS	cWW	cSW		ntSW

3D structures

Complete motif including flanking bases

Sequence	Counts
ACCCCAUGCCGAACU	3
UACCCAUCCCGAACA	1
UUCCCAUUCCGAACA	1
UUCCCAUGCCGAACA	1

Non-Watson-Crick part of the motif

Sequence	Counts
CCCCAUGCCGAAC	3
ACCCAUCCCGAAC	1
UCCCAUUCCGAAC	1
UCCCAUGCCGAAC	1

Release history

Release	3.88	3.89
Date	2024-09-11	2024-10-09
Status	New id, no parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-cSH-cWS-tSW-cSW-cWW-F-F-F-F
Heat map statistics: Min 0.08 | Avg 0.25 | Max 0.63

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Coloring options: Nucleotide numbers

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