Motif HL_97896.1 Version HL_97896.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5CCB_001 | 5CCB | 0.3491 | 7 | N | tRNA | C | 13 | A | 14 | G | 22 | cWW | |
| 2 | HL_1U1Y_001 | 1U1Y | 0.4108 | 3 | R | RNA (17-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 12||||P_1 | cWW | |
| 3 | HL_5MSF_001 | 5MSF | 0.4011 | 3 | R | RNA (18-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 12||||P_1 | cWW | |
| 4 | HL_7MSF_001 | 7MSF | 0.3952 | 3 | R | RNA (14-mer) | C | 5||||P_1 | A | 6||||P_1 | G | 10||||P_1 | cWW | |
| 5 | HL_2IZN_001 | 2IZN | 0.3903 | 3 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | C | 13||||P_1 | cWW | |
| 6 | HL_6YFT_018 | 6YFT | 0.1574 | 0 | RR | RNA | A | 9 | U | 10 | U | 21 | cWW | |
| 7 | HL_7KI3_001 | 7KI3 | 0.1147 | 3 | C | HCV genotype 1a miR-122 site-1 | C | 10 | U | 11 | G | 15 | cWW | |
| 8 | HL_4V88_204 | 4V88 | 0.0000 | 4 | A6 | SSU rRNA | C | 777 | G | 778 | G | 783 | cWW | |
| 9 | HL_4V88_197 | 4V88 | 0.2975 | 4 | A6 | SSU rRNA | U | 450 | A | 451 | A | 456 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUCAC | 2 |
| CAGUCGGUAG | 1 |
| CAACAG | 1 |
| GAUUAC | 1 |
| AUU | 1 |
| CUGAUG | 1 |
| CGUAUUG | 1 |
| UAAUUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUCA | 2 |
| AGUCGGUA | 1 |
| AACA | 1 |
| AUUA | 1 |
| U | 1 |
| UGAU | 1 |
| GUAUU | 1 |
| AAUUC | 1 |
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