Motif HL_98833.2 Version HL_98833.2 of this group appears in releases 1.5 to 1.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 7-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1H4S_001 | 1H4S | 0.0000 | 1 | T | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | C | 17|||A | G | 19 | U | 20 | A | 21 | G | 22 | cWW | cSH | ||
| 2 | HL_1J1U_001 | 1J1U | 0.3416 | 1 | tRNA D-loop | B | tRNA(Tyr) | C | 513 | A | 514 | G | 515 | C | 516 | C | 517 | U | 518 | G | 520 | U | 521 | A | 522 | G | 523 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCCCGGUAG | 1 |
| CAGCCUGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCCCGGUA | 1 |
| AGCCUGGUA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_98833.2 | Only in the parent motif |
|---|---|---|---|
| HL_98833.1 Compare | HL_1H4S_001, HL_1J1U_001 | HL_2ZUF_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_98833.2 | Only in the child motif |
|---|---|---|---|
| HL_98833.3 Compare | HL_1H4S_001, HL_1J1U_001 | HL_2ZUF_001 |
- Annotations
-
- (1)
- tRNA D-loop (1)
- Basepair signature
- cWW-cWS-R-R-R-R-R-R
- Heat map statistics
- Min 0.34 | Avg 0.17 | Max 0.34
Coloring options: