Motif HL_98833.1 Version HL_98833.1 of this group appears in releases 0.3 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1H4S_001 | 1H4S | 0.2693 | 4 | T | tRNA | C | 13 | A | 14 | G | 15 | C | 17 | C | 17|||A | A | 21 | G | 22 | cWW | ||
| 2 | HL_1J1U_001 | 1J1U | 0.0000 | 4 | tRNA D-loop | B | tRNA(Tyr) | C | 513 | A | 514 | G | 515 | C | 517 | U | 518 | A | 522 | G | 523 | cWW | ncWS |
| 3 | HL_2ZUF_001 | 2ZUF | 0.2757 | 5 | B | tRNA-Arg | U | 913 | A | 914 | G | 915 | C | 917 | A | 917|||A | A | 921 | G | 922 | cWW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCCCGGUAG | 1 |
| CAGCCUGGUAG | 1 |
| UAGCCAGGACAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCCCGGUA | 1 |
| AGCCUGGUA | 1 |
| AGCCAGGACA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_98833.1 | Only in the parent motif |
|---|---|---|---|
| HL_52890.2 Compare | HL_1J1U_001 | HL_2ZUF_001, HL_1H4S_001 | HL_3EPH_001, HL_2ZM5_001 |
| HL_43598.1 Compare | HL_1H4S_001 | HL_2ZUF_001, HL_1J1U_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_98833.1 | Only in the child motif |
|---|---|---|---|
| HL_98833.2 Compare | HL_1H4S_001, HL_1J1U_001 | HL_2ZUF_001 | |
| HL_12595.2 Compare | HL_2ZUF_001 | HL_1H4S_001, HL_1J1U_001 | HL_3L0U_001, HL_1QU2_001 |
- Annotations
-
- (2)
- tRNA D-loop (1)
- Basepair signature
- cWW-cWS-R-R-R
- Heat map statistics
- Min 0.27 | Avg 0.21 | Max 0.41
Coloring options: