Motif HL_98833.3 Version HL_98833.3 of this group appears in releases 1.8 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZUF_001 | 2ZUF | 0.2549 | 4 | B | tRNA | U | 913 | A | 914 | G | 915 | C | 916 | C | 917 | A | 917|||A | A | 921 | G | 922 | cWW | cWS | |
| 2 | HL_1J1U_001 | 1J1U | 0.0000 | 3 | tRNA D-loop | B | tRNA | C | 513 | A | 514 | G | 515 | C | 516 | C | 517 | U | 518 | A | 522 | G | 523 | cWW | ncWS |
| 3 | HL_1H4S_001 | 1H4S | 0.2444 | 3 | tRNA D-loop | T | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | C | 17|||A | A | 21 | G | 22 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGCCAGGACAG | 1 |
| CAGCCUGGUAG | 1 |
| CAGCCCGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCCAGGACA | 1 |
| AGCCUGGUA | 1 |
| AGCCCGGUA | 1 |
Release history
| Release | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_98833.3 | Only in the parent motif |
|---|---|---|---|
| HL_98833.2 Compare | HL_1H4S_001, HL_1J1U_001 | HL_2ZUF_001 | |
| HL_12595.2 Compare | HL_2ZUF_001 | HL_1H4S_001, HL_1J1U_001 | HL_3L0U_001, HL_1QU2_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (2)
- (1)
- Basepair signature
- cWW-cWS-R-R-R-R
- Heat map statistics
- Min 0.24 | Avg 0.20 | Max 0.38
Coloring options: