Motif HL_98885.1 Version HL_98885.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4PJO_001 | 4PJO | 0.9964 | 1 | 1 | U1 RNA variant (48-MER) with 4-helix junction replaced by kissing loop (HIV-1 (Mal) DIS) and shorter stem-loop 4. | G | 17 | A | 18 | G | 20 | U | 21 | G | 22 | C | 23 | A | 24 | C | 25 | A | 26 | C | 27 | cWW | ntWW | |
| 2 | HL_1ZCI_001 | 1ZCI | 0.0000 | 1 | Pseudoknot geometry | A | RNA (23-mer) | G | 7 | A | 8 | G | 10 | U | 11 | G | 12 | C | 13 | A | 14 | C | 15 | A | 16 | C | 17 | cWW | |
| 3 | HL_1ZCI_002 | 1ZCI | 0.0681 | 1 | Pseudoknot geometry | B | RNA (23-mer) | G | 7 | A | 8 | G | 10 | U | 11 | G | 12 | C | 13 | A | 14 | C | 15 | A | 16 | C | 17 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGUGCACAC | 2 |
| GAGGUGCACAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGUGCACA | 2 |
| AGGUGCACA | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry (2)
- (1)
- Basepair signature
- cWW-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.07 | Avg 0.46 | Max 1.00
Coloring options: