Motif IL_00171.1 Version IL_00171.1 of this group appears in releases 0.3 to 0.3
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1SI3_001 | 1SI3 | 0.0000 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW |
| 2 | IL_3F1H_041 | 3F1H | 1.3698 | 2 | A | LSU rRNA | C | 1076 | A | 1077 | C | 1079 | * | G | 1059 | U | 1060 | G | 1062 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGA*UGA | 1 |
| CAUC*GUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 1 |
| AU*UU | 1 |
Release history
| Release | 0.3 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_00171.1 | Only in the parent motif |
|---|---|---|---|
| IL_88737.1 Compare | IL_1SI3_001 | IL_3F1H_041 | |
| IL_29746.1 Compare | IL_3F1H_041 | IL_1SI3_001 | IL_420D_002, IL_420D_001, IL_2R22_001, IL_3CZW_001, IL_3CZW_002, IL_406D_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_00171.1 | Only in the child motif |
|---|---|---|---|
| IL_35391.1 Compare | IL_3F1H_041 | IL_1SI3_001 | |
| IL_69192.1 Compare | IL_1SI3_001 | IL_3F1H_041 |
- Annotations
-
- Isolated non-canonical cWW contact (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 1.37 | Avg 0.68 | Max 1.37
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