Motif IL_29746.1 Version IL_29746.1 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_406D_002 | 406D | 0.2913 | 0 | Isolated cWH basepair | A+E | U | 8||A | G | 9||A | G | 10||A | * | U | 25||A | G | 26||A | G | 27||A | cWW | ncWH | cWW |
| 2 | IL_3CZW_002 | 3CZW | 0.2770 | 0 | Isolated cWH basepair | X | U | 10 | G | 11 | A | 12 | * | U | 7||||2_555 | G | 8||||2_555 | A | 9||||2_555 | cWW | cWH | cWW |
| 3 | IL_2R22_001 | 2R22 | 0.0000 | 0 | A+B | U | 6 | G | 7 | A | 8 | * | U | 19 | G | 20 | A | 21 | cWW | cWH | cWW | |
| 4 | IL_3F1H_041 | 3F1H | 0.0685 | 2 | A | G | 1059 | U | 1060 | G | 1062 | * | C | 1076 | A | 1077 | C | 1079 | cWW | cWW | ||
| 5 | IL_3CZW_001 | 3CZW | 0.0685 | 0 | Isolated cWH basepair | X | U | 10||||2_555 | G | 11||||2_555 | A | 12||||2_555 | * | U | 7 | G | 8 | A | 9 | cWW | cWH | cWW |
| 6 | IL_420D_001 | 420D | 0.3942 | 0 | B+A | A | 26 | A | 27 | U | 28 | * | A | 5 | G | 6 | U | 7 | cWW | cWH | cWW | |
| 7 | IL_420D_002 | 420D | 1.3798 | 0 | A+B | A | 10 | A | 11 | U | 12 | * | A | 21 | G | 22 | U | 23 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGA*UGA | 3 |
| AAU*AGU | 2 |
| UGG*UGG | 1 |
| GUUG*CAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 4 |
| A*G | 2 |
| UU*AU | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_29746.1 | Only in the parent motif |
|---|---|---|---|
| IL_09381.1 Compare | IL_2R22_001, IL_3CZW_001, IL_3CZW_002, IL_420D_002, IL_420D_001 | IL_3F1H_041, IL_406D_002 | IL_3F1H_062, IL_3LOA_003, IL_1O9M_003 |
| IL_24704.1 Compare | IL_406D_002 | IL_420D_002, IL_420D_001, IL_2R22_001, IL_3CZW_001, IL_3F1H_041, IL_3CZW_002 | |
| IL_44893.1 Compare | IL_3F1H_041 | IL_420D_002, IL_420D_001, IL_2R22_001, IL_3CZW_001, IL_3CZW_002, IL_406D_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_29746.1 | Only in the child motif |
|---|---|---|---|
| IL_29746.2 Compare | IL_420D_002, IL_420D_001, IL_2R22_001, IL_3CZW_001, IL_3CZW_002, IL_406D_002 | IL_3F1H_041 | |
| IL_00171.1 Compare | IL_3F1H_041 | IL_420D_002, IL_420D_001, IL_2R22_001, IL_3CZW_001, IL_3CZW_002, IL_406D_002 | IL_1SI3_001 |
- Annotations
-
- (4)
- Isolated cWH basepair (3)
- Basepair signature
- Heat map statistics
- Min 0.04 | Avg 0.52 | Max 1.55
Coloring options: