Motif IL_00512.1 Version IL_00512.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1KUQ_003 | 1KUQ | 0.7577 | 1 | Tandem non-canonical cWW pairs | B | 16S RIBOSOMAL RNA FRAGMENT | G | 26 | A | 27||A | G | 28||A | G | 30 | * | U | 39 | G | 40 | G | 41 | U | 42 | cWW | ncWW | cwW | cWW | |
| 2 | IL_6DLR_005 | 6DLR | 0.0000 | 1 | tWW and near cWH | A | Guanidine-I riboswitch | G | 77 | G | 78 | A | 79 | G | 80 | * | C | 92 | A | 93 | G | 95 | C | 96 | cWW | cBW | tWW | cWW | |
| 3 | IL_4PMI_008 | 4PMI | 0.4750 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46 | G | 47 | G | 48 | C | 49 | * | G | 70 | G | 71 | A | 73 | C | 74 | cWW | ntWW | cWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGAG*UGGU | 1 |
| GGAG*CAGGC | 1 |
| GGGC*GGUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGA*GG | 1 |
| GA*AGG | 1 |
| GG*GUA | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs (1)
- tWW and non-canonical cWW (1)
- tWW and near cWH (1)
- Basepair signature
- cWW-L-R-tWW-cWW
- Heat map statistics
- Min 0.48 | Avg 0.49 | Max 0.95
Coloring options: