Motif IL_00734.1 Version IL_00734.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-7 | 1-9 | 2-8 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1MFQ_001 | 1MFQ | 0.0000 | 0 | A | SRP RNA | U | 117 | A | 118 | A | 119 | G | 120 | * | C | 230 | A | 231 | G | 232 | U | 233 | A | 234 | cWW | cWW | |||
| 2 | IL_3KTW_003 | 3KTW | 0.8916 | 2 | C | SRP RNA | G | 224 | U | 225 | G | 226 | C | 227 | * | G | 193 | G | 194 | G | 195 | A | 196 | C | 199 | ntHW | cWW | ntWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAG*CAGUA | 1 |
| GUGC*GGGAACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*AGU | 1 |
| UG*GGAAC | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_00734.1 | Only in the parent motif |
|---|---|---|---|
| IL_61730.1 Compare | IL_3KTW_003 | IL_1MFQ_001 | |
| IL_52173.1 Compare | IL_1MFQ_001 | IL_3KTW_003 | IL_1U6B_004, IL_1J2B_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_00734.1 | Only in the child motif |
|---|---|---|---|
| IL_00697.1 Compare | IL_3KTW_003 | IL_1MFQ_001 | IL_1VX2_005 |
| IL_10743.1 Compare | IL_1MFQ_001 | IL_3KTW_003 | IL_1VX2_015, IL_1U6B_004, IL_4CUV_104, IL_1J2B_001, IL_1VWW_129 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-R-L-cWW
- Heat map statistics
- Min 0.89 | Avg 0.45 | Max 0.89
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