Motif IL_10743.1 Version IL_10743.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1U6B_004 | 1U6B | 0.4909 | 0 | B | 197-MER | C | 96 | A | 97 | A | 98 | G | 99 | C | 100 | * | G | 119 | A | 120 | A | 121 | G | 122 | cWW | cWW | cWW | ||
| 2 | IL_1VWW_129 | 1VWW | 0.0000 | 0 | 5 | 28S ribosomal RNA | G | 4095 | C | 4096 | G | 4097 | A | 4098 | G | 4099 | * | C | 4110 | U | 4111 | C | 4112 | U | 4113 | ncWW | cWW | |||
| 3 | IL_4CUV_104 | 4CUV | 0.5774 | 0 | 1 | 25S RRNA | U | 2508 | U | 2509 | A | 2510 | C | 2511 | C | 2512 | * | G | 2435 | U | 2436 | G | 2437 | A | 2438 | cWW | ncWW | ncWW | cWW | |
| 4 | IL_1J2B_001 | 1J2B | 0.7099 | 0 | C | tRNA(Val) | G | 943 | G | 944 | A | 945 | G | 946 | G | 947 | * | C | 926 | G | 927 | C | 928 | C | 929 | cWW | cWW | |||
| 5 | IL_1MFQ_001 | 1MFQ | 0.7951 | 0 | A | SRP RNA | C | 230 | A | 231 | G | 232 | U | 233 | A | 234 | * | U | 117 | A | 118 | A | 119 | G | 120 | cWW | cWW | |||
| 6 | IL_1VX2_015 | 1VX2 | 0.8022 | 0 | 2 | 18S ribosomal RNA | C | 223 | A | 224 | G | 225 | U | 287 | G | 288 | * | C | 295 | U | 296 | A | 297 | G | 298 | cWW | ncwW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAGC*GAAG | 1 |
| GCGAG*CUCU | 1 |
| UUACC*GUGA | 1 |
| GGAGG*CGCC | 1 |
| CAGUA*UAAG | 1 |
| CAGUG*CUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAG*AA | 1 |
| CGA*UC | 1 |
| UAC*UG | 1 |
| GAG*GC | 1 |
| AGU*AA | 1 |
| AGU*UA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_10743.1 | Only in the parent motif |
|---|---|---|---|
| IL_21427.1 Compare | IL_4CUV_104 | IL_1MFQ_001, IL_1VX2_015, IL_1U6B_004, IL_1J2B_001, IL_1VWW_129 | IL_3U5F_007, IL_4CUX_007, IL_4BPP_007, IL_2QBG_075 |
| IL_00734.1 Compare | IL_1MFQ_001 | IL_1VX2_015, IL_1U6B_004, IL_4CUV_104, IL_1J2B_001, IL_1VWW_129 | IL_3KTW_003 |
| IL_14901.1 Compare | IL_1J2B_001 | IL_1MFQ_001, IL_1VX2_015, IL_1U6B_004, IL_4CUV_104, IL_1VWW_129 | IL_4A1B_029 |
| IL_38328.1 Compare | IL_1U6B_004 | IL_1MFQ_001, IL_1VX2_015, IL_4CUV_104, IL_1J2B_001, IL_1VWW_129 | IL_1Y0Q_002, IL_3CUN_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_10743.1 | Only in the child motif |
|---|---|---|---|
| IL_72032.1 Compare | IL_1MFQ_001, IL_4CUV_104, IL_1J2B_001 | IL_1VX2_015, IL_1U6B_004, IL_1VWW_129 | IL_4CUX_084, IL_4W21_054, IL_4W23_015, IL_4W21_027, IL_4W21_043 |
| IL_77152.1 Compare | IL_1U6B_004 | IL_1MFQ_001, IL_1VX2_015, IL_4CUV_104, IL_1J2B_001, IL_1VWW_129 | IL_1Y0Q_002, IL_3CUN_001, IL_3J7A_010 |
- Annotations
-
- (6)
- Basepair signature
- cWW-L-R-R-L-L-cWW
- Heat map statistics
- Min 0.49 | Avg 0.65 | Max 0.99
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