Motif IL_53587.2 Version IL_53587.2 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	1-6	2-3	2-5	3-4
1	IL_4CUV_084	4CUV	0.9195	4		1	25S RRNA	A	1901	G	1902	G	1906	*	C	2333	U	2334	U	2336	cWW			cWW
2	IL_4A1B_081	4A1B	0.9277	4		1	26S RRNA	A	1925	G	1926	G	1930	*	C	2328	U	2329	U	2331	cWW			cWW
3	IL_3U5H_085	3U5H	0.9244	4		5	25S rRNA	A	1901	G	1902	G	1906	*	C	2333	U	2334	U	2336	cWW			cWW
4	IL_1VW3_070	1VW3	0.8390	1		A	21S ribosomal RNA	U	2437	U	2439	G	2440	*	C	2608	G	2609	A	2610	ncWW			cWW
5	IL_4BPP_006	4BPP	0.6985	3		A	18S RRNA	U	57	G	58	G	62	*	C	83	U	84	G	85	cWW	cWH		cWW
6	IL_3J7A_005	3J7A	0.6837	3		A	SSU rRNA	U	58	G	59	G	63	*	C	89	U	90	G	91	cWW	cWH		cWW
7	IL_1VW3_035	1VW3	0.3401	1		A	21S ribosomal RNA	A	1280	A	1282	G	1283	*	C	1230	A	1231	U	1232	cWW		cSW	cWW
8	IL_2QBG_045	2QBG	0.1850	1		B	23S rRNA	A	1247	U	1249	G	1250	*	C	1196	G	1197	U	1198	cWW		cSW	cWW
9	IL_4QCN_041	4QCN	0.1137	1		A	23S Ribosomal RNA	A	1293	U	1295	G	1296	*	C	1241	G	1242	U	1243	cWW		cSW	cWW
10	IL_4IOA_043	4IOA	0.0965	1	Isolated cWS basepair (H)	X	LSU rRNA	A	1260	U	1262	G	1263	*	C	1210	G	1211	U	1212	cWW		cSW	cWW
11	IL_1VX6_063	1VX6	0.0000	1		A	28S ribosomal RNA	A	1577	U	1579	G	1580	*	C	1525	G	1526	U	1527	cWW		cSW	cWW
12	IL_4CUV_064	4CUV	0.1105	1		1	25S RRNA	A	1428	U	1430	G	1431	*	C	1376	G	1377	U	1378	cWW		cSW	cWW
13	IL_1S72_046	1S72	0.1157	1	Isolated cWS basepair (H)	0	LSU rRNA	G	1351	C	1353	G	1354	*	C	1301	G	1302	C	1303	cWW		cSW	cWW
14	IL_3U5H_062	3U5H	0.1232	1		5	25S rRNA	A	1428	U	1430	G	1431	*	C	1376	G	1377	U	1378	cWW		cSW	cWW
15	IL_4TS2_003	4TS2	0.2586	0	Isolated cWS basepair	X+Y	Spinach aptamer RNA, bimolecular construct	A	17	U	18	G	19	*	C	80	G	81	U	82	cWW		ncSW	cWW
16	IL_4QCN_030	4QCN	0.2755	0		A	23S Ribosomal RNA	A	917	U	918	A	919	*	U	951	G	952	U	953	cWW		ncSW	cWW
17	IL_3U5H_052	3U5H	0.3310	0		5	25S rRNA	U	1123	U	1124	U	1125	*	A	1133	G	1134	A	1135	cWW		ncSW	cWW
18	IL_4W21_075	4W21	0.3639	0		5	28S ribosomal RNA	U	1861	U	1862	U	1863	*	A	1871	G	1872	A	1873	cWW		ncSW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AGUG*CGU	6
AGUCGG*CUGU	3
UUU*AGA	2
UAUG*CGA	1
UGCCAG*CUG	1
UGAAAG*CUG	1
AUAG*CAU	1
GACG*CGC	1
AUG*CGU	1
AUA*UGU	1

Non-Watson-Crick part of the motif

Sequence	Counts
GU*G	6
U*G	4
GUCG*UG	3
AU*G	1
GCCA*U	1
GAAA*U	1
UA*A	1
AC*G	1

Release history

Release	1.18
Date	2014-10-07
Status	Updated, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_53587.2	Only in the parent motif
IL_53587.1 Compare	IL_1S72_046, IL_3U5H_052, IL_3U5H_062, IL_4TS2_003, IL_4IOA_043, IL_2QBG_045, IL_4CUV_064, IL_4CUV_084, IL_1VX6_063, IL_4QCN_030, IL_3U5H_085, IL_4QCN_041, IL_1VW3_035, IL_1VW3_070, IL_4A1B_081	IL_4BPP_006, IL_3J7A_005, IL_4W21_075	IL_3LOA_003, IL_4KYY_002, IL_3U5F_093, IL_1VW3_049, IL_2QBG_065, IL_4QCN_063, IL_1S72_062
IL_01827.1 Compare	IL_3J7A_005, IL_4BPP_006	IL_1S72_046, IL_3U5H_052, IL_4W21_075, IL_3U5H_062, IL_4TS2_003, IL_4IOA_043, IL_2QBG_045, IL_4CUV_064, IL_4CUV_084, IL_1VX6_063, IL_4QCN_030, IL_3U5H_085, IL_4QCN_041, IL_1VW3_035, IL_1VW3_070, IL_4A1B_081	IL_1VX6_086

Children motifs

This motif has no children motifs.

Annotations: (15)
Isolated cWS basepair (H) (2)
Isolated cWS basepair (1)
Basepair signature: cWW-cSW-cWW
Heat map statistics: Min 0.08 | Avg 0.56 | Max 1.10

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