Motif IL_03252.1 Version IL_03252.1 of this group appears in releases 1.15 to 1.15
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-6 | 2-3 | 2-4 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4CUV_012 | 4CUV | 0.0000 | 2 | 1 | 25S RRNA | U | 169 | G | 170 | * | U | 248 | U | 250 | G | 251 | A | 253 | cWW | cWW | |
2 | IL_1VW3_002 | 1VW3 | 0.9611 | 4 | A | 21S ribosomal RNA | A | 3273 | U | 3274 | * | A | 25 | A | 27 | A | 29 | U | 32 | cWW | cWW | ntSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UG*UUUGUA | 1 |
AU*AAAUAUUU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
*UUGU | 1 |
*AAUAUU | 1 |
Release history
Release | 1.15 |
---|---|
Date | 2014-06-20 |
Status | New id, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_03252.1 | Only in the parent motif |
---|---|---|---|
IL_58586.3 Compare | IL_1VW3_002 | IL_4CUV_012 | IL_1NTB_004, IL_3U5H_088 |
Children motifs
Child motif | Common motif instances | Only in IL_03252.1 | Only in the child motif |
---|---|---|---|
IL_45593.1 Compare | IL_4CUV_012 | IL_1VW3_002 | IL_4CUV_087, IL_1VX6_089, IL_3U5H_088 |
IL_74400.1 Compare | IL_1VW3_002 | IL_4CUV_012 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-cWW
- Heat map statistics
- Min 0.96 | Avg 0.48 | Max 0.96
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