Motif IL_45593.1 Version IL_45593.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-6 | 2-3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_088 | 3U5H | 0.0000 | 0 | 5 | 25S rRNA | G | 1947 | G | 1948 | * | C | 2098 | A | 2099 | A | 2100 | C | 2101 | cWW | cWW |
| 2 | IL_4CUV_087 | 4CUV | 0.1740 | 0 | 1 | 25S RRNA | G | 1947 | G | 1948 | * | C | 2098 | A | 2099 | A | 2100 | C | 2101 | cWW | cWW |
| 3 | IL_1VX6_089 | 1VX6 | 0.5511 | 0 | A | 28S ribosomal RNA | G | 2215 | G | 2216 | * | U | 2391 | A | 2392 | A | 2393 | C | 2394 | cWW | cWW |
| 4 | IL_4CUV_012 | 4CUV | 0.7723 | 2 | 1 | 25S RRNA | U | 169 | G | 170 | * | U | 248 | U | 250 | G | 251 | A | 253 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GG*CAAC | 2 |
| GG*UAAC | 1 |
| UG*UUUGUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 3 |
| *UUGU | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_45593.1 | Only in the parent motif |
|---|---|---|---|
| IL_98601.1 Compare | IL_4CUV_087, IL_3U5H_088 | IL_1VX6_089, IL_4CUV_012 | IL_4NVV_053, IL_1NTB_004 |
| IL_03252.1 Compare | IL_4CUV_012 | IL_4CUV_087, IL_1VX6_089, IL_3U5H_088 | IL_1VW3_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_45593.1 | Only in the child motif |
|---|---|---|---|
| IL_04466.1 Compare | IL_4CUV_087, IL_3U5H_088 | IL_1VX6_089, IL_4CUV_012 | IL_4QCN_050, IL_1NTB_004 |
| IL_57674.1 Compare | IL_1VX6_089, IL_4CUV_012 | IL_4CUV_087, IL_3U5H_088 |
- Annotations
-
- (4)
- Basepair signature
- cWW-R-R-cWW
- Heat map statistics
- Min 0.17 | Avg 0.45 | Max 0.79
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