Motif IL_58586.3 Version IL_58586.3 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-6 | 2-3 | 2-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VW3_002 | 1VW3 | 0.8913 | 4 | A | A | 3273 | U | 3274 | * | A | 25 | A | 27 | A | 29 | U | 32 | cWW | cWW | ntSH |
| 2 | IL_1NTB_004 | 1NTB | 0.0000 | 2 | A+B | C | 18 | U | 19 | * | A | 105 | C | 106 | A | 108 | G | 110 | cWW | cWW | |
| 3 | IL_3U5H_088 | 3U5H | 0.6860 | 0 | 5 | G | 1947 | G | 1948 | * | C | 2098 | A | 2099 | A | 2100 | C | 2101 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AU*AAAUAUUU | 1 |
| CU*ACCACG | 1 |
| GG*CAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AAUAUU | 1 |
| *CCAC | 1 |
| *AA | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_58586.3 | Only in the parent motif |
|---|---|---|---|
| IL_58586.2 Compare | IL_1NTB_004, IL_3U5H_088 | IL_1VW3_002 | IL_3V2F_051 |
Children motifs
| Child motif | Common motif instances | Only in IL_58586.3 | Only in the child motif |
|---|---|---|---|
| IL_98601.1 Compare | IL_1NTB_004, IL_3U5H_088 | IL_1VW3_002 | IL_4CUV_087, IL_4NVV_053 |
| IL_03252.1 Compare | IL_1VW3_002 | IL_1NTB_004, IL_3U5H_088 | IL_4CUV_012 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-cWW
- Heat map statistics
- Min 0.69 | Avg 0.55 | Max 0.90
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