Motif IL_03932.1 Version IL_03932.1 of this group appears in releases 3.15 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-4 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3WBM_004 | 3WBM | 0.9930 | 0 | Other IL | X+Y | RNA (25-MER) | U | 23 | C | 24 | * | G | 2 | U | 3 | A | 4 | cWW | cWW | ||
| 2 | IL_5TBW_111 | 5TBW | 0.3158 | 1 | Major groove platform with intercalation | 1 | LSU rRNA | U | 2891 | A | 2892 | * | U | 2909 | A | 2910 | G | 2912 | tHS | cWW | cWW | |
| 3 | IL_4V9F_089 | 4V9F | 0.1490 | 1 | Major groove platform with intercalation | 0 | LSU rRNA | U | 2557 | G | 2558 | * | C | 2575 | A | 2576 | G | 2578 | ntHS | cWW | cWW | |
| 4 | IL_4WF9_097 | 4WF9 | 0.0892 | 1 | Major groove platform with intercalation | X | LSU rRNA | U | 2549 | G | 2550 | * | C | 2567 | A | 2568 | G | 2570 | ntHS | cWW | cWW | |
| 5 | IL_4Y4O_274 | 4Y4O | 0.0833 | 1 | Major groove platform with intercalation (H) | 2A | LSU rRNA | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | G | 2543 | ntHS | cWW | cWW | |
| 6 | IL_5J7L_342 | 5J7L | 0.0000 | 1 | Major groove platform with intercalation | DA | LSU rRNA | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | G | 2543 | ntHS | cWW | cWW | |
| 7 | IL_4IOA_093 | 4IOA | 0.1020 | 1 | Major groove platform with intercalation (H) | X | LSU rRNA | U | 2501 | G | 2502 | * | C | 2519 | A | 2520 | G | 2522 | ntHS | cWW | cWW | |
| 8 | IL_4KQY_009 | 4KQY | 0.3888 | 1 | Minor groove platform | A | SAM-I riboswitch | C | 49||||4_555 | G | 50||||4_555 | * | C | 73||||4_555 | A | 74||||4_555 | G | 76||||4_555 | cWW | cWW | ncSH | |
| 9 | IL_4KQY_004 | 4KQY | 0.3888 | 1 | Minor groove platform | A | SAM-I riboswitch | C | 49 | G | 50 | * | C | 73 | A | 74 | G | 76 | cWW | cWW | ncSH | |
| 10 | IL_5TBW_070 | 5TBW | 0.8390 | 0 | Single stack bend | 1 | LSU rRNA | C | 1670 | C | 1671 | * | G | 1776 | U | 1777 | G | 1778 | cWW | cWW | ||
| 11 | IL_4C7O_002 | 4C7O | 0.8595 | 0 | Single stack bend | E | SRP RNA | C | 8 | U | 9 | * | A | 36 | U | 37 | G | 38 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*CAAG | 5 |
| CG*CAAG | 2 |
| UC*GUA | 1 |
| UA*UAAG | 1 |
| CC*GUG | 1 |
| CU*AUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 8 |
| *U | 3 |
Release history
| Release | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform with intercalation (4)
- Single stack bend (2)
- Major groove platform with intercalation (H) (2)
- Minor groove platform (2)
- Other IL (1)
- Basepair signature
- cWW-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.51 | Max 1.00
Coloring options: