Motif IL_04021.1 Version IL_04021.1 of this group appears in releases 3.91 to 3.92
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_001 | 4V9F | 0.1070 | 0 | Triple sheared with non-canonical cWW | 0 | LSU rRNA | G | 21 | U | 22 | G | 23 | G | 24 | A | 25 | U | 26 | U | 27 | * | A | 516 | U | 517 | G | 518 | A | 519 | A | 520 | A | 521 | U | 522 | cWW | tSH | tSH | tHS | cWw | cWW | |
| 2 | IL_8P9A_244 | 8P9A | 0.0822 | 0 | Triple sheared with non-canonical cWW (H) | AT+AR | 5.8S rRNA | A | 13 | C | 14 | G | 15 | G | 16 | A | 17 | U | 18 | C | 19 | * | G | 404 | U | 405 | G | 406 | A | 407 | A | 408 | A | 409 | U | 410 | cWW | ntSH | tSH | tSH | ntHS | cWw | cWW |
| 3 | IL_9DFE_001 | 9DFE | 0.0807 | 0 | Triple sheared with non-canonical cWW (H) | 1A | LSU rRNA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | cWW | ntSH | tSH | tSH | tHS | cWw | cWW |
| 4 | IL_5J7L_245 | 5J7L | 0.0581 | 0 | Triple sheared with non-canonical cWW | DA | LSU rRNA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | cWW | ntSH | tSH | tSH | tHS | cWw | cWW |
| 5 | IL_4WF9_001 | 4WF9 | 0.0000 | 0 | Triple sheared with non-canonical cWW | X | LSU rRNA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 555 | U | 556 | G | 557 | A | 558 | A | 559 | A | 560 | C | 561 | cWW | ntSH | tSH | tSH | tHS | cWw | cWW |
| 6 | IL_7A0S_001 | 7A0S | 0.0665 | 0 | Triple sheared with non-canonical cWW | X | LSU rRNA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 520 | U | 521 | G | 522 | A | 523 | A | 524 | A | 525 | C | 526 | cWW | ntSH | tSH | tSH | ntHS | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGGAUG*CUGAAAC | 4 |
| GUGGAUU*AUGAAAU | 1 |
| ACGGAUC*GUGAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGAU*UGAAA | 5 |
| CGGAU*UGAAA | 1 |
- Annotations
-
- Triple sheared with non-canonical cWW (4)
- Triple sheared with non-canonical cWW (H) (2)
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.08 | Max 0.13
Coloring options: