Motif IL_04106.2 Version IL_04106.2 of this group appears in releases 3.48 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 2-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_087 | 4V9F | 0.6361 | 2 | Isolated non-canonical cWW pair | 0 | LSU rRNA | G | 2609 | U | 2610 | G | 2613 | * | U | 2545 | U | 2546 | C | 2547 | cWW | cwW | cWW | |
| 2 | IL_3E5C_001 | 3E5C | 0.4950 | 3 | Isolated non-canonical cWW pair | A | SMK box (SAM-III) Riboswitch | A | 27 | G | 28 | C | 32 | * | G | 12 | A | 13 | U | 14 | cWW | cWW | cWW | |
| 3 | IL_5J7L_282 | 5J7L | 0.3791 | 1 | Isolated non-canonical cWW pair | DA | LSU rRNA | G | 1031 | A | 1032 | G | 1034 | * | C | 1121 | G | 1122 | C | 1123 | cWW | cWW | cWW | |
| 4 | IL_6E8U_001 | 6E8U | 0.0000 | 3 | Isolated non-canonical cWW pair | B | RNA (37-MER) | A | 6 | A | 7 | A | 11 | * | U | 30 | G | 31 | U | 32 | cWW | cWW | cWW | |
| 5 | IL_5TBW_145 | 5TBW | 0.3672 | 1 | Isolated non-canonical cWW pair | 4 | 5.8S rRNA | U | 93 | C | 94 | A | 96 | * | U | 64 | A | 65 | A | 66 | cWW | ncWW | cWW | |
| 6 | IL_6CZR_154 | 6CZR | 0.6853 | 2 | 1a | SSU rRNA | A | 1186 | U | 1187 | G | 1188 | * | U | 1035 | A | 1038 | U | 1039 | ncSW | ncSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGAG*UUC | 1 |
| AGAUGC*GAU | 1 |
| GAUG*CGC | 1 |
| AAGGAA*UGU | 1 |
| UCGA*UAA | 1 |
| AUG*UGCAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGA*U | 1 |
| GAUG*A | 1 |
| AU*G | 1 |
| AGGA*G | 1 |
| CG*A | 1 |
| U*GCA | 1 |
Release history
| Release | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (5)
- (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.37 | Avg 0.50 | Max 0.85
Coloring options: