Motif IL_04466.1 Version IL_04466.1 of this group appears in releases 1.18 to 1.18
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-6 | 2-3 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4QCN_050 | 4QCN | 0.9651 | 1 | A | 23S Ribosomal RNA | U | 1461 | G | 1462 | * | C | 1629 | A | 1630 | A | 1632 | A | 1633 | cWW | cWW |
2 | IL_1NTB_004 | 1NTB | 0.6860 | 2 | A+B | RNA (22-mer) + RNA (18-mer) | C | 18 | U | 19 | * | A | 105 | C | 106 | A | 108 | G | 110 | cWW | cWW |
3 | IL_3U5H_088 | 3U5H | 0.0000 | 0 | 5 | 25S rRNA | G | 1947 | G | 1948 | * | C | 2098 | A | 2099 | A | 2100 | C | 2101 | cWW | cWW |
4 | IL_4CUV_087 | 4CUV | 0.1740 | 0 | 1 | 25S RRNA | G | 1947 | G | 1948 | * | C | 2098 | A | 2099 | A | 2100 | C | 2101 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GG*CAAC | 2 |
UG*CACAA | 1 |
CU*ACCACG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
*AA | 2 |
*ACA | 1 |
*CCAC | 1 |
Release history
Release | 1.18 |
---|---|
Date | 2014-10-07 |
Status | New id, 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_04466.1 | Only in the parent motif |
---|---|---|---|
IL_45593.1 Compare | IL_4CUV_087, IL_3U5H_088 | IL_4QCN_050, IL_1NTB_004 | IL_1VX6_089, IL_4CUV_012 |
IL_67005.1 Compare | IL_4QCN_050, IL_1NTB_004 | IL_4CUV_087, IL_3U5H_088 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-R-R-cWW
- Heat map statistics
- Min 0.17 | Avg 0.54 | Max 1.00
Coloring options: