Motif IL_05062.3 Version IL_05062.3 of this group appears in releases 3.7 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V8P_187 | 4V8P | 0.2789 | 0 | Triple sheared related | D1 | LSU rRNA | U | 764 | A | 765 | G | 766 | C | 767 | A | 768 | G | 769 | * | C | 751 | C | 752 | A | 753 | A | 754 | G | 755 | cWW | tSH | tSH | ntHS | cWW | |
| 2 | IL_5J7L_063 | 5J7L | 0.0000 | 0 | Triple sheared related | AA | SSU rRNA | A | 1430 | A | 1431 | G | 1432 | A | 1433 | A | 1434 | G | 1435 | * | C | 1466 | C | 1467 | A | 1468 | C | 1469 | U | 1470 | cWW | tSH | tSH | ntHS | cWW | |
| 3 | IL_4V9F_018 | 4V9F | 0.3166 | 0 | Triple sheared related | 0 | LSU rRNA | A | 562 | C | 563 | G | 564 | A | 565 | A | 566 | U | 567 | * | A | 591 | G | 592 | A | 593 | C | 594 | U | 595 | cWW | cWB | ntSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGCAG*CCAAG | 1 |
| AAGAAG*CCACU | 1 |
| ACGAAU*AGACU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCA*CAA | 1 |
| AGAA*CAC | 1 |
| CGAA*GAC | 1 |
- Annotations
-
- Triple sheared related (3)
- Basepair signature
- cWW-tSH-tSH-L-R-L-cWW
- Heat map statistics
- Min 0.28 | Avg 0.22 | Max 0.40
Coloring options: