#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-82-93-83-94-75-6
1 IL_5TBW_1215TBW0.462401 LSU rRNAC3162A3163C3164A3165C3166*G3284C3285G3286U3287G3288ncWWncWWncWWncWWacWW
2 IL_7VYX_0047VYX0.45530Partly complementaryCsgRNAG21G22A23U24G25*U37U38A39U40C41cWWncWWancWwncWwncWW
3 IL_4WF9_0844WF90.43140Other ILX LSU rRNAA2122A2123U2124U2125C2126*G2217G2218C2219U2220U2221cWWncWWncWWcWW
4 IL_8S95_0028S950.21930Triple non-canonical cWW pairsCEnterovirus 5' cloverleaf cis-acting replication elementC84U85C86C87G88*C101C102U103U104G105cWWncwWcWWncWwcWW
5 IL_5BTM_0015BTM0.00000Triple non-canonical cWW pairsARNA (55-mer)U10U11C12U13A14*U42U43C44U45A46cWWncWWcwWncWwcwWcWW
6 IL_8DP3_0028DP30.20510Triple non-canonical cWW pairsREnterovirus 5' cloverleaf cis-acting replication elementC71U72U73U74G75*C54U55C56U57G58cWWncWWcwWcWWcWwcWW
7 IL_8SP9_0028SP90.23800Triple non-canonical cWW pairsCEnterovirus 5' cloverleaf cis-acting replication elementC99U100U101U102G103*C82U83C84U85G86cWWncwWncWWcWwcWW
8 IL_4V88_4224V880.32760A6 SSU rRNAC726U727U728G729G730*C708C709U710U711G712cWWcwWcWwncWWcWW
9 IL_8C3A_0448C3A0.482001 LSU rRNAU1037U1038C1039U1040C1041*G1001A1002U1003U1004A1005cWWcwWncWScWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUUG*CUCUG2
CACAC*GCGUG1
GGAUG*UUAUC1
AAUUC*GGCUU1
CUCCG*CCUUG1
UUCUA*UUCUA1
CUUGG*CCUUG1
UUCUC*GAUUA1
Non-Watson-Crick part of the motif
SequenceCounts
UUU*UCU2
ACA*CGU1
GAU*UAU1
AUU*GCU1
UCC*CUU1
UCU*UCU1
UUG*CUU1
UCU*AUU1

Release history

Release3.803.813.823.833.843.853.86
Date2024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-17
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Triple non-canonical cWW pairs (4)
  • (3)
  • Other IL (1)
  • Partly complementary (1)
  • Basepair signature
    cWW-cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.15 | Avg 0.36 | Max 0.63
    Help

    Coloring options:

    IL_5TBW_121:IL_5TBW_121 = 0IL_5TBW_121:IL_7VYX_004 = 0.3174IL_5TBW_121:IL_4WF9_084 = 0.4703IL_5TBW_121:IL_8S95_002 = 0.443IL_5TBW_121:IL_5BTM_001 = 0.4624IL_5TBW_121:IL_8DP3_002 = 0.5195IL_5TBW_121:IL_8SP9_002 = 0.4975IL_5TBW_121:IL_4V88_422 = 0.4891IL_5TBW_121:IL_8C3A_044 = 0.5161IL_7VYX_004:IL_5TBW_121 = 0.3174IL_7VYX_004:IL_7VYX_004 = 0IL_7VYX_004:IL_4WF9_084 = 0.4257IL_7VYX_004:IL_8S95_002 = 0.4072IL_7VYX_004:IL_5BTM_001 = 0.4553IL_7VYX_004:IL_8DP3_002 = 0.4953IL_7VYX_004:IL_8SP9_002 = 0.4796IL_7VYX_004:IL_4V88_422 = 0.4544IL_7VYX_004:IL_8C3A_044 = 0.5137IL_4WF9_084:IL_5TBW_121 = 0.4703IL_4WF9_084:IL_7VYX_004 = 0.4257IL_4WF9_084:IL_4WF9_084 = 0IL_4WF9_084:IL_8S95_002 = 0.4172IL_4WF9_084:IL_5BTM_001 = 0.4314IL_4WF9_084:IL_8DP3_002 = 0.4353IL_4WF9_084:IL_8SP9_002 = 0.4654IL_4WF9_084:IL_4V88_422 = 0.47IL_4WF9_084:IL_8C3A_044 = 0.628IL_8S95_002:IL_5TBW_121 = 0.443IL_8S95_002:IL_7VYX_004 = 0.4072IL_8S95_002:IL_4WF9_084 = 0.4172IL_8S95_002:IL_8S95_002 = 0IL_8S95_002:IL_5BTM_001 = 0.2193IL_8S95_002:IL_8DP3_002 = 0.2204IL_8S95_002:IL_8SP9_002 = 0.2543IL_8S95_002:IL_4V88_422 = 0.2741IL_8S95_002:IL_8C3A_044 = 0.4334IL_5BTM_001:IL_5TBW_121 = 0.4624IL_5BTM_001:IL_7VYX_004 = 0.4553IL_5BTM_001:IL_4WF9_084 = 0.4314IL_5BTM_001:IL_8S95_002 = 0.2193IL_5BTM_001:IL_5BTM_001 = 0IL_5BTM_001:IL_8DP3_002 = 0.2051IL_5BTM_001:IL_8SP9_002 = 0.238IL_5BTM_001:IL_4V88_422 = 0.3276IL_5BTM_001:IL_8C3A_044 = 0.482IL_8DP3_002:IL_5TBW_121 = 0.5195IL_8DP3_002:IL_7VYX_004 = 0.4953IL_8DP3_002:IL_4WF9_084 = 0.4353IL_8DP3_002:IL_8S95_002 = 0.2204IL_8DP3_002:IL_5BTM_001 = 0.2051IL_8DP3_002:IL_8DP3_002 = 0IL_8DP3_002:IL_8SP9_002 = 0.148IL_8DP3_002:IL_4V88_422 = 0.2893IL_8DP3_002:IL_8C3A_044 = 0.5147IL_8SP9_002:IL_5TBW_121 = 0.4975IL_8SP9_002:IL_7VYX_004 = 0.4796IL_8SP9_002:IL_4WF9_084 = 0.4654IL_8SP9_002:IL_8S95_002 = 0.2543IL_8SP9_002:IL_5BTM_001 = 0.238IL_8SP9_002:IL_8DP3_002 = 0.148IL_8SP9_002:IL_8SP9_002 = 0IL_8SP9_002:IL_4V88_422 = 0.2877IL_8SP9_002:IL_8C3A_044 = 0.4806IL_4V88_422:IL_5TBW_121 = 0.4891IL_4V88_422:IL_7VYX_004 = 0.4544IL_4V88_422:IL_4WF9_084 = 0.47IL_4V88_422:IL_8S95_002 = 0.2741IL_4V88_422:IL_5BTM_001 = 0.3276IL_4V88_422:IL_8DP3_002 = 0.2893IL_4V88_422:IL_8SP9_002 = 0.2877IL_4V88_422:IL_4V88_422 = 0IL_4V88_422:IL_8C3A_044 = 0.3888IL_8C3A_044:IL_5TBW_121 = 0.5161IL_8C3A_044:IL_7VYX_004 = 0.5137IL_8C3A_044:IL_4WF9_084 = 0.628IL_8C3A_044:IL_8S95_002 = 0.4334IL_8C3A_044:IL_5BTM_001 = 0.482IL_8C3A_044:IL_8DP3_002 = 0.5147IL_8C3A_044:IL_8SP9_002 = 0.4806IL_8C3A_044:IL_4V88_422 = 0.3888IL_8C3A_044:IL_8C3A_044 = 0IL_5TBW_121IL_7VYX_004IL_4WF9_084IL_8S95_002IL_5BTM_001IL_8DP3_002IL_8SP9_002IL_4V88_422IL_8C3A_044Discrepancy0.000.100.200.300.400.500.60
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